Gene detail

Gene detail information of Glyur000220s00014762

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15520.1	0	pleiotropic drug resistance 12
NR	XP_004498642.1	0	PREDICTED: pleiotropic drug resistance protein 1-like isoform X2 [Cicer arietinum]
COG	NP_490302.1	3.00E-33	ABC transporter ATP-binding protein [Nostoc sp. PCC 7120]
Swissprot	tr\|Q0JLC5\|PDR3_ORYSJ	0	Pleiotropic drug resistance protein 3
trEMBL	tr\|G7I6C4\|G7I6C4_MEDTR	0	Drug resistance transporter-like ABC domain protein {ECO:0000313\|EMBL:AES58949.1}

Sequence

Transcript Sequence

>Glyur000220s00014762.1
ATGGCATCTTCACTATTTCGGGATATTGTTGTGGCAAACACATTTGGGACATTCTCACTACTTGCAGTTACTGTTTTGGGAGGATTTGTGATTTCTAGAGAGGATGTGCACAAATGGTTTCTTTGGGGTTATTGGTCCTCACCACTGATGTATGGACAAAATGCTATAGCTGTGAATGAATTTCTTGGGCATAGTTGGAGAAAGGTTATTCCTAATTCCAATGAAACATTGGGAGTATTGATACTGAAATCTCGTGGATTTTTCCCAGAAGCATATTGGTATTGGATTGGAATAGGTGCTTTGATTGGTTATGTTTTCCTATTCAACTTTCTCTTCACCTTGGCTTTGCAACATCTCAGTCCATTCAGAAAGGATCAAGCAGCACTATCCCAAGCGAAATTGCAAGAGAGAAATGCTTCAACAGCTGAAGAGTTCATTCAATTACCAGCACAAAAGAGCTCTTCTGCTAGCAGTAGTGGAAGGAGAGGCATGGTTCTTCCTTTTCAACCTCTATCCCTCACTTTTGATGAGATCAGATATTCTGTAGACATGCCACAGGAAATGAAAAGTCAAGGAGTTGGTGAGGATCGTCTTGAACTTTTGAAGGGTGTTAGTGGTGCTTTTAGACCTGGAGTACTAACAGCGTTGATGGGTGTAAGTGGTGCTGGCAAGACTACTCTACTGGATGTTTTGGCTGGAAGAAAAACTAGTGGATATATTGAAGGAAGCATCACAATATCTGGCTACCAAAAGAATCAAAAAACATTTGCTCGCATATCAGGCTACTGTGAACAATTTGATATCCACTCGCCCAATGTTACAGTTTACGAATCTTTGCTATATTCTGCGTGGCTTCGTTTACCCCCTGAAGTTGATCATGCAACTAGGAAGATGTTCATTGAGGAAGTTATGGAGCTTGTAGAGCTTAACTCAATAAGAGAAGCACTTGTTGGATTGCCAGGAGAGACTGGACTTTCAACCGAGCAGCGCAAGAGGCTCACGATTGCGGTTGAACTTGTAGCCAATCCATCAATAATATTCATGGATGAGCCAACCTCTGGCCTTGATGCTAGAGCAGCTGCAATTGTAATGAGAACCGTGAGGAACACCGTGGACACTGGACGAACTGTTGTTTGCACTATCCATCAGCCAAGTATAGATATATTTGATGCCTTTGATGAGCTGCTACTTCTGAAATTGGGAGGAGATCAGATATATGCTGGTCCAGTAGGGGACCACTGCTCCCATCTGATCCAGTACTTTGAGGCTATTGAAGGAGTTCCTAAAATCAGAGATGGTTATAATCCTGCAACCTGGATGTTGGAAGTTACATCAGCTGGAAAAGAGGCAAATCTTAAGGAGCTTAGGGTTCCTTCTCAAGGTTCAGAGGATCTATACTTTGATAGTCAGTATTCACAGACTTTTGTGGCACAATGCATAGCTTGTCTATGGAAACAGCATTTGTCATATTGGCGGAACACGTCATATACTGCTATTAGACTTCTATTTACTACAATGACAGGCTTATTGTTTGGGCTGATTTTTTGGGATGTTGGCTTGAAAAGGAGAAAGGAGCAAGACCTTTTCAATGCAATGGGTTCAATGTATGCTGCTGTTACCTTCATTGGGGTTGTAAATGGTGCCTCAGTGCAGCCTATAGTAGCAATTGAGAGAACAGTCTTCTACAGAGAAAGAGCTGCAGGAATGTATTCAGCCTTGCCATATGCTCTTGCACAGGCTATTATAGAGCTTCCCCACATCTTGGTTCAGGCTCTTATATATGGGATCATAGTATATGCCATGATGGGATTTGATTTCCTATACTATACCTACTATGGTATGATGACAATGGCCATAACTCCGAATCCACATGTTGCTGGCATATTGTCCACCTCATTCTATGCAATATGGTGCCTTTTCTCAGGCTTCATCATTCCCTTATCATGGTACTACTGGATTTGTCCCGTTGCTTGGACCTTGTATGGATTGGTGGCTTCCCAATATGGAGATGACATGGACAAACTTGAAAATGGTCAAAGGGTTGGAGAATTTGTTAGGAGTTATTTTGGATTTGAACATGATCATCTGGGAGTGGTTGCAGCAGTGGTGGCTAGTTTCTCAGTGTTGCATTCAACTTCCAGAAACGATGAAATCACTGCAATGCTTCTCTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00220	29613	33908	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000220s00014762.1	PF01061.19	ABC2_membrane	1	61	2.60E-09
Glyur000220s00014762.1	PF08370.6	PDR_assoc	66	130	2.50E-27
Glyur000220s00014762.1	PF00005.22	ABC_tran	201	353	2.60E-20
Glyur000220s00014762.1	PF01061.19	ABC2_membrane	478	668	4.30E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.283
SRR1783600	control	0.315
SRR1783602	moderate drought stress	0.084
SRR1811619	moderate drought stress	0.101

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.249
DRR006520	Root Summer glycyrrhizin high producing strain	0.148
DRR006521	Root Winter glycyrrhizin high producing strain	0.025
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.051
DRR006524	Root Summer glycyrrhizin low producing strain	0.076
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.833
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.701

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.486
SRR2868004	Drought Stress (root)	11.092
SRR2967015	Control (root)	3.365

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.053
SRR9715740	Leaf	0.030
SRR9715741	Leaf	0.005
SRR9715739	Root	0.006
SRR9715742	Root	0.084
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.033
SRR8749028	MeJA induced 9h	0.172
SRR8749029	MeJA induced 9h	0.040
SRR8749030	Uninduced	0.020
SRR8749031	Uninduced	0.035
SRR8749032	Uninduced	0.026

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.615
SRR8400027	Control - Root	2.098