Gene detail

Gene detail information of Glyur000219s00011597.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16350.1	2.00E-85	Homeodomain-like superfamily protein
NR	XP_007150607.1	0	hypothetical protein PHAVU_005G166300g [Phaseolus vulgaris]
Swissprot	tr\|Q2V9B0\|MY1R1_SOLTU	8.00E-32	Transcription factor MYB1R1
trEMBL	tr\|V7BX57\|V7BX57_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW22602.1}

Sequence

Transcript Sequence

>Glyur000219s00011597.1
CTGCAGTCAAATACAACATAAAACTTAAAAAAAATAGCTTAATTTAAAGGACATTACTTTACTCGATTTGATTTTGATTTAAAGTAAAAGGATATTATAGCGAAATAAAAATTAGTTTTTGGAAAATANAAAAAGAAGATAATTATTAGTGGCGTGGCAAATGTGAAAAAGAAAACCAGCACAGCAGAGGTTACAAGATGATAGGAATAATAATAGGACNTGTGTGTTGTAGAGTAAGATAAGAAGGGGCAAAATAGTGATTGCAAGGAGCGATGCACCGCGTTCTNCTAACATTACACGAAAGCCCTTAAATTAGAATCCCAGATATAGCCCTGGGCTTGTTCCAAAAATCCACAACTATCCTATCCAATACCAACACCCTCCTTCTCCTTAATTAAGCAAAAAACACATGATAAACTCTTTCTATCTCTAATTTCTTTTCCATTTTCTATAGATATACCATATATCATCACGTTGCTGTTGTTGCCTCTCGCGCTCTCTCTCCCCTCTTGGACCGGGTCAGGCGGCGGAGAATCGGCATGACTCGGCGGTGCTCTCACTGCAGCAACAACGGGCACAACTCGAGGACGTGCCAGTCGCGTGGCGGCGGCGGCGGGGGGGTGAAGCTTTTCGGGGTGAGGCTGACGGATGGATCAATCATAAAGAAGAGCGCCAGCATGGGGAACCTAACCCTACTCTCCTCCGCTCACCACCATTCCTCCTCCCTCGCCGCCTCCTCGCCCAATCCCAGCTCACCCTGCTCCGACCCGCCCCACGAACCCGACGGATACTTGTCCGATGACCCGACCCATGCTTCCACCTTCGCCAGCCACCGCGGAGAAAGGAAAAAAGGTGTTCCATGGACTGAAGAAGAGCATCGGCTGTTCTTGATTGGTCTCCAGAAGCTGGGCAAAGGAGATTGGCGTGGGATAGCACGTAATTTTGTTGTGTCTAGAACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTACTTTATCCGGCAGAGTAACGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGATTCCGGATATGTCTTCAGATCCACCTTCAGTGCCTGAAGAACAAGTACTACTTCCACCTTCTGAGANCAAACAACCTTGTAATGGAAAATCACAGCCTTCATTAAATCTATCTCTCAAGTCAGAATTTGAACCCATGGAAATGGAAAGTACTACTCAAGAAAATGTAGAAGATCCCAATGAAACTACAATGGCATCGAACNGATTGACACCGATGGCTCCTGGATTCTTCCCGGCTTATGTACCTGTCCCATTTTCCGTATGGCCATCAATTGNAGCTCCCTATGAAGAAGTTAACGGAGGAGGAGAGATGTCTCATCATCAGGTCCACAAGCCAATCCCGGTTGTTCCCAAGGAACCTGTCAATGTTGATGAACTTGTGGGAATGTCTAATCTGAGCATTGGGGAAGCACATGCACTTGATAGAGAGCCCTCCCCACTTTCCTTAAAGTTGTTAGGAGAGCCCTCAAGGCAGTCAGCATTCCATGCAAATGCTCCTGTTGGTGGTTCGGATTTAAACNGTGGCAAGAACAGCGCCATTCAAGCGCTATATAAACGGCTAAGAGTATTGATGGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00219	241250	247194	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related
EAR motif-containing Proteins	MYB-related

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000219s00011597.1	PF00249.26	Myb_DNA-binding	107	151	6.80E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.319
SRR1783600	control	7.589
SRR1783602	moderate drought stress	14.413
SRR1811619	moderate drought stress	14.060

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.556
DRR006520	Root Summer glycyrrhizin high producing strain	19.323
DRR006521	Root Winter glycyrrhizin high producing strain	15.292
DRR006522	Root Winter glycyrrhizin high producing strain	14.319
DRR006523	Root Summer glycyrrhizin low producing strain	31.601
DRR006524	Root Summer glycyrrhizin low producing strain	31.271
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.553
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.896

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.736
SRR2868004	Drought Stress (root)	25.015
SRR2967015	Control (root)	27.749

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	68.737
SRR9715740	Leaf	74.628
SRR9715741	Leaf	91.882
SRR9715739	Root	37.386
SRR9715742	Root	67.678
SRR9715743	Root	59.928

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.536
SRR8749028	MeJA induced 9h	47.807
SRR8749029	MeJA induced 9h	30.046
SRR8749030	Uninduced	56.969
SRR8749031	Uninduced	63.972
SRR8749032	Uninduced	62.783

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.856
SRR8400027	Control - Root	25.315