Gene detail

Gene detail information of Glyur000219s00011589.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G51940.1	0	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein
NR	BAI79272.1	0	LysM type receptor kinase [Lotus japonicus]
COG	YP_003270695.1	3.00E-21	serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|F4IB81\|LYK3_ARATH	0	LysM domain receptor-like kinase 3 (Precursor)
trEMBL	tr\|D3KTZ5\|D3KTZ5_LOTJA	0	LysM type receptor kinase {ECO:0000313\|EMBL:BAI79272.1}

Sequence

Transcript Sequence

>Glyur000219s00011589.1
CTCAGACACTGTATACATTCTGTTCTTGTTGCAAGCAAAGCAATGAATCTTACACAGAAACCATGCTGTTTGAAGTTACTACTTTACTTTCATCTCCTTCTGCTTCAGCTTCACTGCATCTGTTCTTATCCCACACCCACGAACTGCACGGACACAACCAGCGTTTGCTCTTCTTTCTTGGCCTTTAAGCCTCAACCAGACCAGACCCTGGCGGTGATAAAGAGCACGTTTGATGTGTTGCCAAGTGACATCACTGTTGAAGGCAATGGCTGGGATTATGTATTCATCAGGAAAAACTGTTCTTGTGCTGCTGGGGTGAAGAAGTATGTGTCAAACACCACGTTCACTGTGAGATCCAATGGAGGGTTTGTGTATGACATGGTGATGGATGCCTATGATGGGCTTGCTTTCTTGCCCAACATCAACATGACCCGTTGGGCAAGAAAAGGTGCTGTCATACCATTGAGCTTGTTCTGTGGCTGCTCAAGTGGAGTGTGGAACTATTTGGTGAGTTATGTCATCAAAGATGGGGATAGTATTGAATCCTTGGCAAGCCGGTTTGGAGTTAGTATGGATAGCATTGAGACATTAAATGGCATCAGCAATCCTGATAGTGTCACTGTTGGTTCTCTGTATTATATACCTCTTGATTCGGTTCCTGGTGAGCCTTATCACCTGAAGAATGATACTACTCCAGTTCCTGTCCCTTTCCCATCCGTTTCTAATTTTTCAGGTGATCGAGTCCAACATGGGGCTCATGTACCTTATGATTGGATCATAGGGGGTTTAGGGGTTGGTCTTGCTCTGATAATATTAAGCATGATTCTGTGTGTCTCTTTGAGAATGTCAAATTGTTTAGTTGAAGCCAGAAATCATGCAAAAGATGCTGATGGCAAGATCTCTCATAAATGCCATATTATTGGGAATCTAAGTTTGTTTTGTGGTTGTGGAAGATACATATGCATCAAACCTGTAGACAAGAAGCAAACTGATGGTGAATCCAGCAACCACCAAATTACCATTCCCAAAGCTTCAACTCTAAGGCCTGAAGTATTTGACATGGATAAGCCTGTCATTTTTACATACGAAGAGATTCTTTACTCAACCGATGGTTTCTCTGATTCAAATCTGCTAGGACATGGAACATATGGTTCTATTTATCATGGCCTCCTTCGTGAACAGGAAGTTGCTATTAAAAGAATGACCGCTGCTAAAACTAAAGAATTTATATCAGAGATGAAAGTTCTGTGCAAGGTTCATCATGCCAATCTGGTAGAATTGGTCGGCTATGCAGCCAGTCATGATGAGCTTTTCCTTATCTATGAATATGCTCAGAAGGGTTCACTCAGCAGCCATTTGCATGATCCTCAAAATAAGGGTCATTCATCACTTTCTTGGATCACAAGGGTCCACATTGTGCTTGATGCTGCTAGGGGCCTTGAATACATACATGAACATACAAAAACTCGTTATGTTCATCAATCTATCAAGACAAGCAACATTTTACTTGATTCTTCCTTTAGAGCCAAGATATCAGCTTTTGGGTTAGCAAAACTTGTAGGTAAAACAAATGAGGGAGATACCGCAGCCACCAAAGTTGTCAGTACATATGGNTATCTTGCTCCAGAATACTTGAGCAACGGCCTTGTGACGACCAAAAGTGATGTCTATGCATTTGGTGTTGTTCTTTTTGAGATTATATCAGGGAAGGAGGCCATTATTCAAATACAAGGTTCTGAAAGACGATCACTGGCATCTATTATGTTGGCAGTTCTTAGGAATGTACCTGATGCCATGAGCATGTCAAGCATGAGAGATCACATTGATCTTATTATGATGGATCTGTATCCCCATGATTGTGTGTTTAAGGCAAGTTGGTTTCTCCGTTTTTCATTATTATGTTTATGGTTGAGGATGGCCATGCTGGCAAAGCATTGCGTGGATGACGATCCCATTTTACGTCCTGATATGAAGCAAGTGGTGATCTCCCTCTCAGAGATCCTCCTGTCATCTGTTGAGTGGGAAGCAACTCTAGCCGGGAACAGCCAGGTATTCAGCGGGCTTATTCNGGGAAGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00219	202882	207053	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.3
Carbohydrate-Active enzymes Family	CBM50

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000219s00011589.1	PF01476.15	LysM	172	209	7.20E-07
Glyur000219s00011589.1	PF07714.12	Pkinase_Tyr	376	577	4.80E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.214
SRR1783600	control	0.134
SRR1783602	moderate drought stress	0.115
SRR1811619	moderate drought stress	0.167

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.433
DRR006520	Root Summer glycyrrhizin high producing strain	0.567
DRR006521	Root Winter glycyrrhizin high producing strain	0.499
DRR006522	Root Winter glycyrrhizin high producing strain	0.398
DRR006523	Root Summer glycyrrhizin low producing strain	0.361
DRR006524	Root Summer glycyrrhizin low producing strain	0.325
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.329
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.322

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.307
SRR2868004	Drought Stress (root)	0.995
SRR2967015	Control (root)	0.788

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.190
SRR9715740	Leaf	0.012
SRR9715741	Leaf	0.680
SRR9715739	Root	0.000
SRR9715742	Root	0.554
SRR9715743	Root	0.191

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.817
SRR8749028	MeJA induced 9h	0.374
SRR8749029	MeJA induced 9h	0.817
SRR8749030	Uninduced	0.706
SRR8749031	Uninduced	0.459
SRR8749032	Uninduced	1.088

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.130
SRR8400027	Control - Root	0.369