Gene detail

Gene detail information of Glyur000219s00011587.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16500.1	7.00E-59	phytochrome-associated protein 1
NR	XP_007150599.1	1.15E-148	hypothetical protein PHAVU_005G165600g [Phaseolus vulgaris]
Swissprot	tr\|Q8LAL2\|IAA26_ARATH	1.00E-73	Auxin-responsive protein IAA26
trEMBL	tr\|V7BZR6\|V7BZR6_PHAVU	4.00E-149	Auxin-induced protein {ECO:0000256\|RuleBase:RU004549}

Sequence

Transcript Sequence

>Glyur000219s00011587.1
ATGGACGAAAGGTCAAGAAATGAGGAGAGAAAACTGGAGCTGAGGCTTGGTCCACCCGGTACTGAGGACTGGTCTCTCAATGATAAAACCAACACAGAAAGAGATGAGTCTCTACTCTCTCTTGGTTACTTCTCCACCACCATGCCGAACTCCAACAACAATGGGTTCCAAAGCAAGNATAATATTCCTCCCTCTGACACCCCATGGTCTTCCTCAGGCTACCACCACTACCAGAGTAATAACAACAAAGCTTCATCATTTCTTCAGTTCTCACCAAGCCCACCTGTGATGGGTAGTAAGGAAGCAACAGCATCACAAACCTGTTGCCCTAGAGTGGTAGAGTTGCAGAATAATGGTGCTGATAAGAAAGTGTTCTNTCCTCCCTCTTCTGCTGCAAACACAGCTGTGCAGCAGCCCAACAGCTCTCAGAAAAGGTACCCCCCACAGCTTTTTCCATATCTCATAACTGCTCCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCTTTCAGGAAGAACCTTGCAAGTAGCAGCTCTTGTAAGCCACCACCANCTGAGTCCCAGACTCAGCAGCATAACAAGAAGGTTGCTGGTAAAAAACCTATTGAAAACAACTATGGTACTAAAGGCTTGTTTGTCAAGATCAACATGGATGGTGTTCCAATTGGGAGGAAAGTTGACCTCAATGCTTATGACAGCTATGAAAATCTATCCTCTGCNGTGGATGAGCTCTTTAGAGGCCTCCTTGCAGCTCAACGAGATTCCTCTGGTGGTGGAGTTAACAATAAGCAGGAGGAAGAGAAAGCGATTACCGGTTTATTGGATGGAAGTGGGGAGTATACNCTTGTGTATGAGGATAACGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTTCGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGCAATAAGCAAGACAAGATATCTACTTGACGGGGCAATGAAAATGAAAGGCTCTTCTGATTTGACGTTTTGGTTCTTTTCTCTCATGAAGATCATGGAATGAAATTAGTAGCTTACATTACAACTAAGTAATGTGTATGAATGTATTTTATTTTTTTTATGAAGATTTGAAATGTTTATGGATTGTACAAATAGGGGAAGGAAAACTTCACGGGTGTGTACTCATCATTTACTGTTGAGTCTTAACTTGTTTTGGTTTGTACTTTAAAGTTCCTTTTGTAGATGAGGTTTTGATGATGCGGCATGAACGGGTGTTTTTTTTTTTTTTTTTAAAAAATGCCCTTTTAGCTTGTTAACAAGTTGAGTTTCTGTTACGTGATGAATAATTTTCCTCAAAATTGTCAGTTACTCGAATTCGTTCAACAAGATTTGGACGAATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00219	183105	186223	-

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA
EAR motif-containing Proteins	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000219s00011587.1	PF02309.11	AUX_IAA	85	319	1.10E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	93.865
SRR1783600	control	94.070
SRR1783602	moderate drought stress	208.140
SRR1811619	moderate drought stress	211.293

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	338.219
DRR006520	Root Summer glycyrrhizin high producing strain	335.184
DRR006521	Root Winter glycyrrhizin high producing strain	16.211
DRR006522	Root Winter glycyrrhizin high producing strain	15.874
DRR006523	Root Summer glycyrrhizin low producing strain	287.587
DRR006524	Root Summer glycyrrhizin low producing strain	288.155
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.280
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.239

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	82.431
SRR2868004	Drought Stress (root)	96.184
SRR2967015	Control (root)	118.176

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.652
SRR9715740	Leaf	34.496
SRR9715741	Leaf	39.531
SRR9715739	Root	99.979
SRR9715742	Root	171.541
SRR9715743	Root	153.472

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	41.537
SRR8749028	MeJA induced 9h	33.405
SRR8749029	MeJA induced 9h	17.850
SRR8749030	Uninduced	14.124
SRR8749031	Uninduced	2.341
SRR8749032	Uninduced	6.979

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	159.475
SRR8400027	Control - Root	188.874