Gene detail

Gene detail information of Glyur000219s00011581

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50340.1	3.00E-161	ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases
NR	XP_004486791.1	0	PREDICTED: DNA repair protein RadA homolog [Cicer arietinum]
COG	YP_003318757.1	4.00E-123	DNA repair protein RadA [Sphaerobacter thermophilus DSM 20745]
trEMBL	tr\|G7IHX8\|G7IHX8_MEDTR	0	DNA repair-like proteinRadA {ECO:0000313\|EMBL:AES67907.2}

Sequence

Transcript Sequence

>Glyur000219s00011581.1
CTTCAAAACAGTCGCACTAGAACGGGCTGTCTGTCTGTCCCTTGGCATCGCATATAAACCCTATAAACGCGGAGCAGAGGGTTTATGCAAAAGTGAAAGTTGAAGTTGGTCTTCTTCTTCTTCTTCTGCAACAAACACATCAATTATCAACTATNACAGCATGAGACTCCTCAGAACGCTCTTCATCCACCACAAGCACAAGCGCCACCTCCTCCACCCCAAATGCACATTCTCATTTCCATTTTCATCTCTACTTTCCGACTNCTCCACCGCCGCAACAACCACAGAGACGGATTCCCCAGAAGAACCCAATGGTAGAACAAACCATCCCACTGGTTCCGGTTGGAGCATGTACGCCGANGTGNTTGCGCAGCATAGGCTCAGTGACGACGAAGCCGAGGAAAAGCCAAGTGGAGGAGGGATGATGCTGAACCTCAAGAGGAGGGTGAAGAGAACTGGGAGGGTGAAAACTCAGTGGGTTTGTTGTAACTGCGGCTATGAAGCGGGGCAGTGGTGGGGCACGTGCCCCTCATGTGGCATAGTTGGCACAATGAAGGAGTTCCATGAAGCCAAACTCACTGACTCTCATAATAAGCTCAGAAATGGGTTAGCAGCTTCTGAGGATGCGNTGGGGTTGTGGCTCCCACAGCGACCTGATCAGTTGCGCCCCATAAAATTGAGCGAGGTAAACTGTGGATTCAACCAACAGAATTGGAGAATTCCTTTGTCTGGCTCTTTTGGAANTGAAGTTTCTACTGTGCTTGGTGGTGGTCTTGTACCAGGCTCTTTGACTTTGATTGGTGGTGATCCTGGTGTTGGGAAGAGTACGCTGCTGTTGCAGATGGCAGCATTGATAGCAGATGGATACAATGGTGTTGAAGCTTCTCCAGTTGTATATGTCTCTGGTGAAGAGAGCCTTCAGCAAATTGGCCACAGAGCAGACCGCCTTGGGATTGAATCTGATATTTATCTATATTCGAGTACTGATATTGAGGACATATTAAAGAAAGCTCAGTCTCTCTCCCCTCGCGCTCTGGTTGTTGATTCAATACAAACTGTTTATTTGAAAGGAATAATAGGAAGTGCTGGAGGGCTTGTGCAGGTGAAGGAATGTACTTCAGCTTTGATGCGGTTTGCAAAAACAACCAACATCCCAGTACTTTTGATTGGACATGTGACGAAATCTGGAGACATAGCGGGGCCTCGTGTCTTGGAGCATATTGTTGATGTTGTTTTGTATATGGAAGGTGAGAGGTACACTTCATATCGAATGCTTCGTGCTGTGAAAAATCGTTTTGGATCCACCGATGAGCTTGGAGTTTTAGAGATGTCACAATCAGGATTCCAGGCTGTTTCAAATGCCAGTGAAATGTTTCTCACTGAACAAGACTCTGATTCAGATGTTTTAGTTGGGTTAGCTTTTACCGCACTTTGCCTTTCACATTGCCCGGTATCAGTGTCAGCTTCAAAAATAGTAAATGGAATTGAAACAAATAGAGCTAATATGATCAAATGTGTTCTTATAAAGCAAGCAGGTCTTCATCTCCAAGAAAATGCTGTGTATTTGAATGTTGTTAGTGGATTGACATTGACAGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTTCCCTATTCCAAAGGGCATTGCATTCATTGCTGAAATTGGCCTTAGTGGAGAGCTTCGCATGGTTCCTCGAATTGACAAAAGNGTACACGCAGTGGCGAAGTTGGGTTACAAAATGTGTGTAGTACCGAAGCAAGCTGAAAAATTTTTAGGAGGTGAAGGTCTAGGAAAGATGAAAATAGTATGTTGCAAGAATCTGAAAGAGTTTATTAATGTTGTATTCAAAAGTAGTCATTAAAAGAAGCTGCTAGTGTTGTGCAGATCTCTCTTTCTCTCTCTCATTATTTTGTAAGATGTAATATTTGACCCTTCAGAAGTTTGTAAATATAGATGTACTAGATTTNGTTTTATCTCGTGTCAATTATCTAATTTGTTCCTACGTGCATTAAATTTGCTGAAGCAAGTCCCCAGTGTTAAAGGCATTATCATAATTATAACTATAATTTAAGACGCTGTAATTAATTTTCTTTGGGGGTATCAAAGTGTTTTTATGCAGTATCACTTGAAAGTTCTGCATCTTATGCTTGTGCCCTCTATTCGCCAGTTTAATCATGGTCTTTGCTGGATGATTCTACCCGTCTGATGTTTATTGAGGATTCACGAAGCTAGGCTGATGGGTTGAGGATAGTAACCTTGCCCACATCCTGTCGGTTATCACAACCCTCTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00219	141960	150212	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006281 DNA repair

molecular_function

GO:0003677 DNA binding

GO:0003684 damaged DNA binding

GO:0005524 ATP binding

GO:0008094 DNA-dependent ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000219s00011581.1	PF13481.1	AAA_25	196	343	5.60E-27
Glyur000219s00011581.1	PF13541.1	ChlI	455	541	1.40E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.158
SRR1783600	control	7.373
SRR1783602	moderate drought stress	11.427
SRR1811619	moderate drought stress	11.486

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.037
DRR006520	Root Summer glycyrrhizin high producing strain	8.509
DRR006521	Root Winter glycyrrhizin high producing strain	7.345
DRR006522	Root Winter glycyrrhizin high producing strain	6.827
DRR006523	Root Summer glycyrrhizin low producing strain	8.088
DRR006524	Root Summer glycyrrhizin low producing strain	8.035
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.525
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.720

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.946
SRR2868004	Drought Stress (root)	6.240
SRR2967015	Control (root)	6.487

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.096
SRR9715740	Leaf	5.277
SRR9715741	Leaf	2.649
SRR9715739	Root	1.956
SRR9715742	Root	2.788
SRR9715743	Root	3.013

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.112
SRR8749028	MeJA induced 9h	4.486
SRR8749029	MeJA induced 9h	2.792
SRR8749030	Uninduced	2.538
SRR8749031	Uninduced	1.394
SRR8749032	Uninduced	3.635

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.887
SRR8400027	Control - Root	11.210