Gene detail information of Glyur000219s00011579 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52080.1 | 9.00E-86 | actin binding protein family |
| NR | XP_006595109.1 | 0 | PREDICTED: protein CHUP1, chloroplastic-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LI74|CHUP1_ARATH | 1.00E-62 | Protein CHUP1, chloroplastic |
| trEMBL | tr|K7M3Q2|K7M3Q2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G42970.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00219 | 136854 | 139704 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 46.685 |
| SRR1783600 | control | 47.072 |
| SRR1783602 | moderate drought stress | 58.470 |
| SRR1811619 | moderate drought stress | 57.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 65.836 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 65.038 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 103.905 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 101.439 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 108.606 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 107.991 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.062 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 57.544 |
| SRR2868004 | Drought Stress (root) | 74.307 |
| SRR2967015 | Control (root) | 73.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.251 |
| SRR9715740 | Leaf | 15.948 |
| SRR9715741 | Leaf | 19.671 |
| SRR9715739 | Root | 3.277 |
| SRR9715742 | Root | 17.111 |
| SRR9715743 | Root | 14.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.392 |
| SRR8749028 | MeJA induced 9h | 83.890 |
| SRR8749029 | MeJA induced 9h | 42.858 |
| SRR8749030 | Uninduced | 79.997 |
| SRR8749031 | Uninduced | 72.533 |
| SRR8749032 | Uninduced | 43.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 69.910 |
| SRR8400027 | Control - Root | 54.663 |