Gene detail

Gene detail information of Glyur000219s00011575

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G21300.1	0	RNA methyltransferase family protein
NR	XP_003597643.1	0	23S rRNA (uracil-5-)-methyltransferase rumA [Medicago truncatula]
COG	YP_001529466.1	8.00E-101	RNA methyltransferase [Desulfococcus oleovorans Hxd3]
Swissprot	tr\|Q8L7S3\|C3H24_ARATH	2.00E-17	Zinc finger CCCH domain-containing protein 24
trEMBL	tr\|G7IHW5\|G7IHW5_MEDTR	0	23S rRNA (Uracil-5)-methyltransferase RumA {ECO:0000313\|EMBL:AES67894.1}

Sequence

Transcript Sequence

>Glyur000219s00011575.1
ATGGCGGCCATTTCAAACCTAACCAACACTCTGCCACTGCACTTCCGAAGGTTTCGACCTTCACCTTCACGTTACCGTCTCTCTCTCTCTACACTCTCATGCTCCCACTCGGAAGTGGAAGTGGAAGTGGGACCCAACAGTAACAAACCCTCTAATCCCAAAACCCCCACACCAAACTCCTACTACCCAAAGCGAGGCCAGACCCTCGAATTGGTATGCGAGTCCCTCGCTTTCAAGGGAAAGGGCCTCTGCAAGGTCACCGAAACTGGCTTCGTCGTCATGTGCGACCGTGCCCTTCCCGGCGAGCGCTTCATCGGCCGCGTCACTCGCAAGAAGGGCAATTATGCCGAGGCTACTAAGGTGAAGACGTTAACTCCTCCGCGCGACATTGTTGATGCCCCTTGCGTCTATGCTCCCAATTGTGGTGGGTGCAAGTTGCAGAACTTGTCTTACGAGGCTCAGCTTCGAGCTAAGGAGGACCAGATGGAATTCTCATTTGGTCCCCTTAAATGGTTACCTAAAGAATCACTGCACGAAAGAAATGTTGTTGNTGGGAGTGAAAACTATGCACTGGGATTGCATGCTCCCGGGTTTTTTGATAAAATTTTAAACATTGACAAGTGCTTACTGCAATCTGATCCTGCTGATAAGGTTCTTGCAGCTATCCAAGAATGTTGGAGAGATCCACAACTTGGTCTTTCTCCCTATAATACTCATTCACANTCAGGATTTCTTAAGCATTTGATGCTGAGATCTGGAAGGGATGTAATGAATGGTCTGCCTGAAGTTATGGTCAACTTTGTGACCTCTTCCTACAGGCCTGAGCTGCTGAAGTTCCTAGTTGATAAAATNTCTGCATTTCCTGAAGTGGTAAGCATCATGAATAATGTAAATACTTCTGTTGGTAACACATCTGTTGGGGAGGAAGAATACACATTGTATGGGAAATCTAGCATTACAGAGACCTTAAGAGGGCTTACGTTCCAAATATCAGCAAACTCTTTCTTTCAAACGAATACTTATCAGGCAGAGGTTTTATATAAGCTTATAGAAGAATGTGCTGGTGTCAGAGGAGATGACTCAGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACACTTGCAAAAAGTGTAAAACATGTTTATGGCTATGAAGTAGTTCCTCAAGCCATCACAGATGCCCGTCTTAATGCCAAGATAAATGGCATACAAAATGCAACATTTGTCCAGGGAGATCTCAATAAAATTGATGAGAATTTCGGGAAGAATTTTCCTAAACCTGACATTGTCATTTCAGACCCCAACCGCCCAGGAATGCACATGAAGTTGATTAAATTCCTGCTAAATCTTAGGGTGCCTCGGATAGTGTACGTGTCATGCAATCCTGCCACATGTGCACGTGACCTTGATTATCTCTGTCATGGTGTGGCGGAACTGAATATAAAAGGATGTTACAAGCTAATAGGCCTACAGCCAGTTGACATGTTCCCACACACACCTCATATTGAGTGTGTTTGCCTTCTGGAGCTTTGTTAATCTGTGATCGATTAAACCTTTTCATTTCAAGGAGATAACAAGCATGGTACAAGGTATAGGTCAAGGTTGGGTCTTCAAGGCGATAGATAGAAAAACACATACGCTTATGNTGCAAGAGCCCCCAAAAGGATGATTAATTCTTAACCTCCAAATGTTGATTACTGTTGAGTGTTGATCTCACTTCATGCGACAAGTCCATCATGGAATAGATCATATGCTACACTTGCCAAATTCTTGCATACTTGAAGAAGATCAGGTGCGAGTCCATGCAACATAAGATGTTTATCCAGATGAGTAAACAGTTTTCAGTTTGTATAAATAGATCATATTCTGTTATTTATCTCTGTCTTTATAATGCTTTCAAGATAAATGCTGTTGTCATGCTGGGGTAAGAAAAAAATGGTATTGACTGGGGTAAGCTTTTAAATTAATTTTCAATGGTGTATTGATATCTTTATTCTGAGCCGGTTTTACCTGAGATCAAAGGGGTACTAGCTCAAACAGAAACATTTATGCTAAACAAGACCTGTATGTTTCACAATTCTCACCCTATCATTAGTCTATCTTAGTGTAGAAGACAAATGACTCGAATCTGTCAAAGACTTAGGTAGGGCATGGCTTGTGTATCGGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00219	109187	114415	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

molecular_function

GO:0003723 RNA binding

GO:0008173 RNA methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000219s00011575.1	PF05958.6	tRNA_U5-meth_tr	324	513	2.20E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.751
SRR1783600	control	7.025
SRR1783602	moderate drought stress	10.145
SRR1811619	moderate drought stress	10.119

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.102
DRR006520	Root Summer glycyrrhizin high producing strain	4.839
DRR006521	Root Winter glycyrrhizin high producing strain	4.340
DRR006522	Root Winter glycyrrhizin high producing strain	4.067
DRR006523	Root Summer glycyrrhizin low producing strain	3.583
DRR006524	Root Summer glycyrrhizin low producing strain	3.739
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.787
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.601

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.745
SRR2868004	Drought Stress (root)	5.135
SRR2967015	Control (root)	5.859

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.278
SRR9715740	Leaf	9.389
SRR9715741	Leaf	5.356
SRR9715739	Root	1.942
SRR9715742	Root	2.250
SRR9715743	Root	2.503

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.078
SRR8749028	MeJA induced 9h	3.421
SRR8749029	MeJA induced 9h	1.328
SRR8749030	Uninduced	0.851
SRR8749031	Uninduced	0.305
SRR8749032	Uninduced	0.602

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.231
SRR8400027	Control - Root	10.339