Gene detail

Gene detail information of Glyur000219s00011572.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29990.1	0	Leucine-rich repeat transmembrane protein kinase protein
NR	XP_004486802.1	0	PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like isoform X1 [Cicer arietinum]
COG	YP_005071928.1	2.00E-13	serine/threonine protein kinase containing TPR domain [Arthrospira platensis NIES-39]
Swissprot	tr\|O65924\|Y2921_ARATH	0	Putative leucine-rich repeat receptor-like protein kinase At2g19210 (Precursor)
trEMBL	tr\|G7IUL7\|G7IUL7_MEDTR	0	LRR receptor-like kinase plant {ECO:0000313\|EMBL:AES67889.2}

Sequence

Transcript Sequence

>Glyur000219s00011572.1
ATGGAAGCACACTTGCTAGTACTTATAGTGTTTCAAGTTTCTTTGACTCTTCCTTTCATTGTTCATGCCCAAAAAAACCAATCAGCCAGCTACACGGATGAAACTACTTCCATCTATTACACTTGGGATGTCAACTTCACAGACAGTGGTGACAGCCACAGCATATCACCTGAATACAAAGCTNCCCTTGATAGACAATTCTGGAAAGTTAGAAGCTTCCCTGAAGGAACCAGGAACTGCTACACCNTTTTTGTTCCTCAAGGAAGTAGCAAGAAATATTTAGTCAGGGCNAGGTTTGTGTATGGAAATTATGATGGCAAAGACTCTCTTCCCCAATTTGATATCTACCTTGGGGCCAAATGGTGGGAATCGGTGGTGTTTGAGGATTCATCCAGTGTGATAACCAAGGAAATCATTTATGCTGCTTCCTCAGATTATGTTCATGTTTGCCTATTTAACACCAACAAGGGTACACCTTTTATTTCAGTTTTGGAGCTTAGAGTTCTNAACAGTGATGCCTATCTAGTTAACTCTCTGGANCTATATCCAGATGATATCTATGACAGAACATGGACACCTTATAATAACTCAACTGATTGGAAACAGATAGATACCTCACTCNCCATAAACCAGGGAGCTTCATTCAATTTTTTACCATTACCACCCTCCATTGTCATGAGAACAGCAGCAATTCCATCAAATGCCAGCAACAATATAGAATTTTACTTCCTTGCCAAGTGTAATGCTTCCACATATTATGTGTACTTGTACTTTGCTGAAATCCAGAAGCTCCAGGAAAATCAGACTAGAGAGTTCAACATTTTTGTAAATGGGGAGCTTTTAAACAATGATCCAATCAATCCTTCATACCTGCAGAGACTGTATTATGTATCAGNTGTAAGTGAAACTCGGTTGGAACTTTGGATTAATAGAACTAGTAGATCAACTCTTCCACCTCTCCTCAGTGCCATCGAGATATATATGACAAAGGACTTCCTACAATCACAAACATATCAAACAGATGTTGATGCTATCACAAATGTCAAGTCAATTTATGGGATCAAGAGAAACTGGCAAGGAGATCCTTGTACTCCACTGCGTTACTTCGGTTTAATTGGAAATATAGCCCCTGCCATATCCAACCTGAAGTCGATAGAATATTTGGATCTGTCAAATAACAGTTTGACTGGGGCCGTGCCTGATTTCCTATCTCAGCTGCGCTTCTTGAAAGTTCTAAACCTGGAAGGAAATCAGCTATCAGGAACAATTCCAATACAACTCACTGTGCGCTCAGAGAATAGTATGCTGGAATCCAATTTTGGTGGAAATCCAAATCTTTGCTTCTCAGGTTCATGCAACAAGAGGAATGGGAATAAGGTTGTAGTTCCACTGGTGGCATCGCTTGGTGGAACTTTCATGATACTAGCAGTGGCAATGATTTCTTTTCTCATATGCAACAGGAGACAACAAGTTTCCCCTCATCCGAGCAAGCTGGGTGCTTATTCCAGAATAAAGGAGGAACTAGAGTCAAATAAACAAGAATTCACCTATGCTGAAGTATTAAGCATTACCAAAAACTTTGAAAAGGTTGTTGGGAAAGGAGCATCTGCAACAGTCTACCATGGCTCTATAGATGATGATACTGAGGTAGCTGTCAAAATGCTATCTCCCTCNGCTCAAGGATATATGCAATTTCAGGCAGAGGGTACTGTGATGATGGCACCAACATGGCTCTCATCTATGAATAAAAACGAAAATGTATTGGGTTGGAATCAACGACTTCAAATAGCAGTGGATGCTGGAGAAGGATTGGAGTATATGCATCACGGCTGCAATCCGCCAATTGTTCATAGAGATGTTAAATCTAAAAACATCTTACTGAATGAGAAATTACAGGGTAAACTAGCTGATTTTGGGTTNTCAAAGATCTTTCCTAATGAAGGTGACACCCATGTGTCCACGGTTGTTGCTGGCACCCCAGGATATCTTGACCCACAGTACAATAGATTAAACAGGTTGAATGAAAAAAGTGATGTCTTCAGTTTTGGGGTGGTTTTGCTTGAGATAATTACAGGCCAACCTGCCATAACCAAANCTGAAGAGAAAACTCACATTATTCAATGGGTTGGTTCCATGCTGCTCGACGAAAGGGAGAATATCGAAGATATTGTGGATCCCAGATTACAGGGAGAATTTGATGTTCATTCTGCAAAGAAAGCGCTAGACACCGCAATGGCTTGTGTAGCACCCACTTCCATCAATAGGCCAACCATGAACCATGTAGTTAGGGAACTGAAACAATGTTTGCCAAAGGAGATTACTATTAATCCGTCTGAACCTAACATTCATGACAGTTTACCCAGAAGCTTTAGTTCTGTCTCCTTTGATAGAATTAGTGGAGAGAGCTCTCTAGAAAGGTNGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00219	94044	99517	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.8.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000219s00011572.1	PF12819.2	Malectin_like	25	328	5.30E-76
Glyur000219s00011572.1	PF12799.2	LRR_4	384	420	2.20E-07
Glyur000219s00011572.1	PF00069.20	Pkinase	579	763	1.50E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.914
SRR1783600	control	5.747
SRR1783602	moderate drought stress	5.272
SRR1811619	moderate drought stress	5.337

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.089
DRR006520	Root Summer glycyrrhizin high producing strain	0.992
DRR006521	Root Winter glycyrrhizin high producing strain	0.845
DRR006522	Root Winter glycyrrhizin high producing strain	0.738
DRR006523	Root Summer glycyrrhizin low producing strain	0.744
DRR006524	Root Summer glycyrrhizin low producing strain	0.754
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.190
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.191

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.862
SRR2868004	Drought Stress (root)	27.613
SRR2967015	Control (root)	15.314

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.883
SRR9715740	Leaf	0.819
SRR9715741	Leaf	1.054
SRR9715739	Root	0.960
SRR9715742	Root	3.400
SRR9715743	Root	2.990

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.101
SRR8749028	MeJA induced 9h	5.385
SRR8749029	MeJA induced 9h	2.558
SRR8749030	Uninduced	4.585
SRR8749031	Uninduced	11.090
SRR8749032	Uninduced	4.538

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.008
SRR8400027	Control - Root	10.839