Gene detail information of Glyur000219s00011570 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G17730.1 | 4.00E-45 | vacuolar protein sorting 46.1 |
| NR | CDO97941.1 | 1.35E-69 | unnamed protein product [Coffea canephora] |
| trEMBL | tr|A0A068TNW6|A0A068TNW6_COFCA | 5.00E-70 | Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO97941.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00219 | 89183 | 92128 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000219s00011570.1 | PF03357.16 | Snf7 | 10 | 81 | 8.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 95.663 |
| SRR1783600 | control | 98.926 |
| SRR1783602 | moderate drought stress | 96.700 |
| SRR1811619 | moderate drought stress | 99.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 194.039 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 198.400 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 162.885 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 165.551 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 266.654 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 275.411 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 99.935 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 104.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 174.879 |
| SRR2868004 | Drought Stress (root) | 167.924 |
| SRR2967015 | Control (root) | 186.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 213.510 |
| SRR9715740 | Leaf | 171.598 |
| SRR9715741 | Leaf | 235.281 |
| SRR9715739 | Root | 558.417 |
| SRR9715742 | Root | 444.934 |
| SRR9715743 | Root | 483.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 216.154 |
| SRR8749028 | MeJA induced 9h | 191.595 |
| SRR8749029 | MeJA induced 9h | 192.083 |
| SRR8749030 | Uninduced | 159.670 |
| SRR8749031 | Uninduced | 121.081 |
| SRR8749032 | Uninduced | 161.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 197.545 |
| SRR8400027 | Control - Root | 213.973 |