Gene detail

Gene detail information of Glyur000219s00011567.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G51720.1	0	Amino acid dehydrogenase family protein
NR	XP_003531631.1	0	PREDICTED: NADP-specific glutamate dehydrogenase-like isoform X1 [Glycine max]
COG	YP_001878642.1	2.00E-147	glutamate dehydrogenase [Akkermansia muciniphila ATCC BAA-835]
Swissprot	tr\|P28998\|DHE4_CHLSO	3.00E-129	NADP-specific glutamate dehydrogenase (Fragment)
trEMBL	tr\|I1KUX4\|I1KUX4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G20930.1}

Sequence

Transcript Sequence

>Glyur000219s00011567.1
GGGGTGCAGGGTTTACTCACTTTCTCCACAGAGTTTCAGTCAGCTCCGAATAAAGTTTCCTCCTTTTTTNTGAATAAACTCAAATGCCTGTTTAAGGACTCTCGAGGTCAACAGATCTCTCTCTCTAATTTGCTGACCAACCGCAGCGAATTCTCTTGTAACGTTCACTTTGCAGAATGTAAAGGATTTAGATTTGTGGAGGGGTCATTGCTGAATGTTGCAGTCTGCTAGTGGAGTGGGGATGAATCCTGCAATGGATGATATCAATTTGATTCAGCAAGCTCAGAGGCATCACTTGGTTGCAAGGGAAATCAGTGAAGAGATTGATTTAGAAATTGGACCTGGAGATGATGATCCTTCATTTGGTAACACTACTCTAATTGGTGGCTCGCAACGGGAATCTTCCACNGAAGAGCACGGGGAGAGCAAGCAGATGGGGATGGTTTCTCAGCTTTCTAATGATGTTCAAGATATGTCAAGTGCCCAACCAGAAAAAAGGAAGAAGAAAGTTGTTAAAAGATGGAGAGAGGAATGGGCAGACACCTATAAATGGGCTTATGTTGATGTGAGAGATGGAACAACAAGGATTTTTTGCTCTGTCTGCAGGGAGTATGGCAGGAAGCACAGAAGAAATCCTTATGGGAATGAAGGCAGTCGTAACATGCAGATGAGTGCCCTAGAAGAACACAATAATAGTTTGCTTCACAAAGAGGCTCTTCGTCTTCAGGCAGCCTCCAAGGATAAAATTATCATCGACAAGCCCATTCATGTAAAAGCTCTTGTGTCAAAAACCGCTGCATCAATACTTGAAGCTACACTAAAAAGGGATCCTCATGAGGCTGAATTCATCCAGGCAGTTCAGGAAGCTGTTCATGCTCTTGAGAGAGTCATAGCGAAAAATTCCCATTATATTAGCATCATGGAGCGCTTGTTGGAACCTGAACGAGTGATTGTTTTTCGAGTTCCATGGGTGGATGATAGGGGTGAGACACATGTTAATCGTGGTTTCCGAATTCAATTTAACCAGTCAATGGGTCCATGTAGGGGTGGTATTCGTTTTCATCCGTCAATGAATTTAAGTATAGCCAAGTTCCTTGGTTTTCAACAGACCTTAAAGAATGCCTTATCCCCTTACAAATTAGGAGGAGCATCCGGAGGAAGTGATTTTGATCCAAAAGGAAAAAGTGATAACGAGATCATGCGATTTTGCCAAAGTTTCATGAGTGAGATGTATCGGTACTTGGGTCCTGACAAGGACCTTCCCTCAGAGGAAATGGGTGTTGGTCCTCGAGAAATGGGGTATCTTTTTGGACAGTATAGACGGCTAGGTGGTCATTTTCAGGGAAGTTTTACAGGACCAAGAATATTTTGGTCTGGCTCCAGCCTTCGGCCTGAAGCTACTGGTTATGGCCTGGTTTTCTTTGCCCAGCTCATACTTGCTGACATGGATAAAGAACTCAAGGGATTAAGATGTGTTGTGAGTGGTTCTGGAAAGATCGCAATGCATGTTTTAGAGAAGCTTATTGCTTATGGTGCTGTTCCCATCTCAGTATCGGATTCAAGAGGATATTTGGTTGATGAAGATGGATTTGACTACATGAAAGTATCATTTTTAAGAGACATCAAAGCTCAACAAAGAAGTTTGAGAGACTATTCAAAGACCTATGCTCGGTCCAAATATTATGANGAAGCGAAACCCTGGAATGAAAGGTGTGATGTCGCATTTGCTTGTGCTTCACAAAATGAAATTGGCCAATCTGATGCCATTAATTTGGTTAATTCGGGTTGTCGTATACTAGTAGAAGGTTCGAACATGCCCTGTACCCCTGAGGCAGTTGATGTTCTTAGGAAAGCTAATGTACTCATTGCTCCTGCTATGGCTGCTGGTGCTGGAGGGGTTGTGGCTGGAGAACTTGAATTAAATCCTGAATGTAATTTGATGCATTGGTCACCNGAGGACTTCGAATCTAAATTGCAGGAAGCAATGAANCAGACTTATCAGAGAGCTATCAAAGCTGCAACTGATTTTGGTTATGAAAAAGAAAGTCCCGAGGCTTTGGGGCATGGAGCAGTCATCTCTGCTTTTCTGACTCTTGCTCAAGCTATGACAGATCAAGGCTGTGTCTAAAAAGTTGATCAAAACCTTGAATGCATCCCAAAGCTGTTATTTTTAACTAGGATGGGAAATTCACATGCACTTAATAATAATTTGCAAGCTAAGGGTGAACGTTGGTACTGGAGTCTCAACATCAAGAAGTTGCACTAATGAGAGAGGATAGTTTCCTTGTAAAATATATAATTTTAGTTGTACAAAAACTGAAGGGTTATCCAGATTATTGCCAGGAAATAGGAGAAATGTTCTTGGCTCATTCAGTCCATCTAGATGCTTGTTTCAGATTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00219	76250	83990	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00262	E1.4.1.4, gdhA	EC:1.4.1.4	Nitrogen metabolism	map00910
			Alanine, aspartate and glutamate metabolism	map00250
			Arginine biosynthesis	map00220

Gene Ontology

biological_process

GO:0006520 cellular amino acid metabolic process

GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000219s00011567.1	PF02812.13	ELFV_dehydrog_N	242	371	3.10E-47
Glyur000219s00011567.1	PF00208.16	ELFV_dehydrog	388	635	2.90E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.943
SRR1783600	control	20.063
SRR1783602	moderate drought stress	21.202
SRR1811619	moderate drought stress	21.028

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.712
DRR006520	Root Summer glycyrrhizin high producing strain	30.340
DRR006521	Root Winter glycyrrhizin high producing strain	26.781
DRR006522	Root Winter glycyrrhizin high producing strain	25.935
DRR006523	Root Summer glycyrrhizin low producing strain	35.026
DRR006524	Root Summer glycyrrhizin low producing strain	35.218
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.355
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.191

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	63.450
SRR2868004	Drought Stress (root)	64.576
SRR2967015	Control (root)	71.832

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.279
SRR9715740	Leaf	48.544
SRR9715741	Leaf	56.656
SRR9715739	Root	8.184
SRR9715742	Root	34.926
SRR9715743	Root	30.177

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.492
SRR8749028	MeJA induced 9h	28.594
SRR8749029	MeJA induced 9h	12.319
SRR8749030	Uninduced	11.345
SRR8749031	Uninduced	5.586
SRR8749032	Uninduced	6.128

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	69.209
SRR8400027	Control - Root	68.585