Gene detail information of Glyur000219s00011566 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G51700.1 | 6.00E-30 | DOF zinc finger protein 1 |
| NR | XP_007150543.1 | 7.32E-96 | hypothetical protein PHAVU_005G161200g [Phaseolus vulgaris] |
| Swissprot | tr|O82155|DOF17_ARATH | 1.00E-44 | Dof zinc finger protein DOF1.7 |
| trEMBL | tr|V7BWZ7|V7BWZ7_PHAVU | 3.00E-96 | Uncharacterized protein {ECO:0000313|EMBL:ESW22537.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00219 | 72611 | 73258 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000219s00011566.1 | PF02701.10 | zf-Dof | 16 | 76 | 4.90E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 51.076 |
| SRR1783600 | control | 52.534 |
| SRR1783602 | moderate drought stress | 64.401 |
| SRR1811619 | moderate drought stress | 87.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 58.244 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 57.077 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 64.481 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 62.672 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 107.708 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 103.737 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.273 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.539 |
| SRR2868004 | Drought Stress (root) | 19.166 |
| SRR2967015 | Control (root) | 31.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 45.031 |
| SRR9715740 | Leaf | 39.876 |
| SRR9715741 | Leaf | 42.896 |
| SRR9715739 | Root | 72.120 |
| SRR9715742 | Root | 134.083 |
| SRR9715743 | Root | 150.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.704 |
| SRR8749028 | MeJA induced 9h | 26.357 |
| SRR8749029 | MeJA induced 9h | 15.725 |
| SRR8749030 | Uninduced | 4.715 |
| SRR8749031 | Uninduced | 0.257 |
| SRR8749032 | Uninduced | 0.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.015 |
| SRR8400027 | Control - Root | 60.595 |