Gene detail information of Glyur000219s00011557 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55190.1 | 2.00E-42 | PRA1 (Prenylated rab acceptor) family protein |
| NR | XP_003543600.1 | 1.93E-95 | PREDICTED: PRA1 family protein F3-like [Glycine max] |
| Swissprot | tr|Q9C889|PR1F2_ARATH | 1.00E-72 | PRA1 family protein F2 |
| trEMBL | tr|I1M5D1|I1M5D1_SOYBN | 7.00E-96 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G42730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00219 | 16730 | 17284 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000219s00011557.1 | PF03208.14 | PRA1 | 28 | 176 | 3.30E-50 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.049 |
| SRR1783600 | control | 36.144 |
| SRR1783602 | moderate drought stress | 39.176 |
| SRR1811619 | moderate drought stress | 39.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 46.173 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.818 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.347 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.160 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.760 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 45.392 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.787 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 109.643 |
| SRR2868004 | Drought Stress (root) | 119.829 |
| SRR2967015 | Control (root) | 111.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 70.265 |
| SRR9715740 | Leaf | 48.910 |
| SRR9715741 | Leaf | 83.576 |
| SRR9715739 | Root | 103.259 |
| SRR9715742 | Root | 66.499 |
| SRR9715743 | Root | 75.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.357 |
| SRR8749028 | MeJA induced 9h | 36.289 |
| SRR8749029 | MeJA induced 9h | 34.381 |
| SRR8749030 | Uninduced | 34.531 |
| SRR8749031 | Uninduced | 13.059 |
| SRR8749032 | Uninduced | 26.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 87.650 |
| SRR8400027 | Control - Root | 99.781 |