Gene detail

Gene detail information of Glyur000218s00011644

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G12730.1	5.00E-121	FASCICLIN-like arabinogalactan 2
NR	BAE71278.1	0	putative fasciclin-like arabinogalactan protein FLA2 [Trifolium pratense]
Swissprot	tr\|Q9SU13\|FLA2_ARATH	4.00E-153	Fasciclin-like arabinogalactan protein 2 (Precursor)
trEMBL	tr\|Q2PES4\|Q2PES4_TRIPR	0	Putative fasciclin-like arabinogalactan protein FLA2 {ECO:0000313\|EMBL:BAE71278.1}

Sequence

Transcript Sequence

>Glyur000218s00011644.1
ATGAAGCAGCAGAGTACAGCACCACTATTCTTCCTCCTCACAGTCATAGGCATAGGCATAGCCATAGCGCTTCTTCCCTCCTCCGCTAGCGCTGCCGCCGCCGCCAGCGGCTCCCACAACATCACCCGCATACTGGCCAAGCACCCCGGTTTCTCCACCTTCAACCACTACCTCTCCGTGACCCACCTCGCCGGCGAGATCAACCGCCGCCAGACCATAACCGTCCTGGCCATGGACAATGCCGCCATGTCCTCCCTCCTGGACAAACACCTCTCCATCTCCACCCTCAAGAACGTCCTCTCCCTCCACGTCCTCGTCGACTACTTCGGCAGCAGGAAGCTCCACCAGATCACCAACGGCACCACCCTCGTCTCCTCCATGTTCCAGGCCACCGGTGTGGCTGCGGGTACCACTGGCTACGTAAACATCACCAATCTCAAGGGAGGAAAAGTGGGCTTCGCCGCCGAAGACAACGACGGCCTCCACTCCTTCTACGTCAAGTCCGTGGAGGAGGTCCCGTACGTGATCTCCGTCCTCCAAATCAGCCAGCCACTGAGCTCCGCCGACGCAGAAGCGCCGACGGCAGCACCAAGCGAGATCGACCTCATCTCCATCATGTCAAAGCAAGGCTGCAAGGCCTTCGCTGACCTCTTGAGACCTTCCAAGGCTCTCCCAACTTTCAAGGAAAACGTTGACGGCGGGTTAACGGTGTTCTGCCCCACCGATACCGCCGTCAACGGTTTCATCCCAAAGTACAAGAACCTCACCGACGCTCAGAAGGTGTCGTTGCTGTTGTACCACGGTGTTCCCGTTTACCAGTCACTTCAGATGCTGAAATCCAACAACGGTGTGATGAACACTTTGGCCACTGAAGGAGCCAACAAGTACGATTTCACCGTGCAGAATGATGGGGAGGATGTGAAGCTTGAGACTAAAATTAACACCGCCAACATTGTTGGGACTTTAATTGACCAAGACCCTTTTGTGGCGTATAAGGTTAGCAAGGTGTTGATGCCCAGAGAGTTGTTCAAGAAGACAGAGGAAGATGACATGGCACCTGCAGAGTCGCCTAAGCCGGCGAAGAAGAAGAAGAGNACTAAGAAGGGAGAAGCTGCAGATGAAGATGCGGATTCACCTGCTGATGGGCCAGGAGCGGATTCAGAATCTGATGACCAGAAGGCTGCTGATGATGATAATGGGGTCGGTGGATTAAACAATGGCTTCAGATTCATCATGGTTTTCTTGAGTTTGTTTGTGGGGTTTTTGCAGCTTCTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00218	240557	242020	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000218s00011644.1	PF02469.17	Fasciclin	50	142	1.40E-06
Glyur000218s00011644.1	PF02469.17	Fasciclin	211	339	3.20E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	155.929
SRR1783600	control	159.387
SRR1783602	moderate drought stress	115.785
SRR1811619	moderate drought stress	133.154

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.609
DRR006520	Root Summer glycyrrhizin high producing strain	43.811
DRR006521	Root Winter glycyrrhizin high producing strain	2.223
DRR006522	Root Winter glycyrrhizin high producing strain	2.253
DRR006523	Root Summer glycyrrhizin low producing strain	11.528
DRR006524	Root Summer glycyrrhizin low producing strain	11.718
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.682
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.584

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	215.167
SRR2868004	Drought Stress (root)	151.779
SRR2967015	Control (root)	124.898

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.354
SRR9715740	Leaf	16.903
SRR9715741	Leaf	18.713
SRR9715739	Root	159.179
SRR9715742	Root	88.478
SRR9715743	Root	93.166

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.994
SRR8749028	MeJA induced 9h	24.368
SRR8749029	MeJA induced 9h	14.544
SRR8749030	Uninduced	15.892
SRR8749031	Uninduced	4.758
SRR8749032	Uninduced	6.140

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	79.405
SRR8400027	Control - Root	102.242