Gene detail information of Glyur000218s00011643 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47650.1 | 3.00E-89 | nudix hydrolase homolog 2 |
| NR | XP_003545505.1 | 3.23E-176 | PREDICTED: nudix hydrolase 2-like isoform X1 [Glycine max] |
| COG | YP_944432.1 | 3.00E-37 | ADP-ribose pyrophosphatase [Psychromonas ingrahamii 37] |
| Swissprot | tr|Q94B74|NUDT2_ARATH | 2.00E-110 | Nudix hydrolase 2 |
| trEMBL | tr|I1M666|I1M666_SOYBN | 1.00E-176 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G00730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00218 | 234383 | 237460 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000218s00011643.1 | PF00293.23 | NUDIX | 108 | 227 | 1.80E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.085 |
| SRR1783600 | control | 0.043 |
| SRR1783602 | moderate drought stress | 0.210 |
| SRR1811619 | moderate drought stress | 0.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.670 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.466 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.332 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.195 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.375 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.497 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.243 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.867 |
| SRR2868004 | Drought Stress (root) | 7.643 |
| SRR2967015 | Control (root) | 3.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.960 |
| SRR9715740 | Leaf | 1.760 |
| SRR9715741 | Leaf | 8.054 |
| SRR9715739 | Root | 0.056 |
| SRR9715742 | Root | 0.030 |
| SRR9715743 | Root | 0.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.012 |
| SRR8749028 | MeJA induced 9h | 6.003 |
| SRR8749029 | MeJA induced 9h | 7.322 |
| SRR8749030 | Uninduced | 13.348 |
| SRR8749031 | Uninduced | 40.901 |
| SRR8749032 | Uninduced | 12.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.940 |
| SRR8400027 | Control - Root | 1.398 |