Gene detail information of Glyur000218s00011640 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G04410.1 | 3.00E-18 | RPM1-interacting protein 4 (RIN4) family protein |
| NR | AFK35596.1 | 7.09E-26 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8GYN5|RIN4_ARATH | 3.00E-09 | RPM1-interacting protein 4 |
| trEMBL | tr|I3S5Q4|I3S5Q4_LOTJA | 3.00E-26 | Uncharacterized protein {ECO:0000313|EMBL:AFK35596.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00218 | 212760 | 216863 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000218s00011640.1 | PF05627.6 | AvrRpt-cleavage | 2 | 39 | 5.80E-24 |
| Glyur000218s00011640.2 | PF05627.6 | AvrRpt-cleavage | 2 | 39 | 2.00E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.088 |
| SRR1783600 | control | 34.567 |
| SRR1783602 | moderate drought stress | 37.510 |
| SRR1811619 | moderate drought stress | 36.657 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.519 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.744 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 36.037 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 35.203 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.105 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.124 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.518 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 43.903 |
| SRR2868004 | Drought Stress (root) | 26.345 |
| SRR2967015 | Control (root) | 23.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.081 |
| SRR9715740 | Leaf | 16.641 |
| SRR9715741 | Leaf | 17.898 |
| SRR9715739 | Root | 12.609 |
| SRR9715742 | Root | 8.192 |
| SRR9715743 | Root | 11.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 81.470 |
| SRR8749028 | MeJA induced 9h | 62.857 |
| SRR8749029 | MeJA induced 9h | 98.022 |
| SRR8749030 | Uninduced | 75.037 |
| SRR8749031 | Uninduced | 74.866 |
| SRR8749032 | Uninduced | 83.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.974 |
| SRR8400027 | Control - Root | 24.946 |