Gene detail

Gene detail information of Glyur000218s00011634

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G04780.2	7.00E-59	FASCICLIN-like arabinoogalactan 7
NR	KHN46901.1	2.86E-126	Fasciclin-like arabinogalactan protein 7 [Glycine soja]
Swissprot	tr\|Q9SJ81\|FLA7_ARATH	3.00E-75	Fasciclin-like arabinogalactan protein 7 (Precursor)
trEMBL	tr\|C6SVG6\|C6SVG6_SOYBN	4.00E-125	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU13239.1}

Sequence

Transcript Sequence

>Glyur000218s00011634.1
CAATGAGAGAAAGGGGGTANTCTCTTCCAGAGAAGCATTTTTTCCATTAAAGTATTATTATATATTGTCTCCAAGAAAGAACCATCCTCAAGTTAGAAGCATCTGTGTGCTGTAGCCTTCCACCACTTTACCTCCAGCTGGAATTTGGAGAGAGTGGTGATAATATTGCAAGGTAGACTAAACAAACTAGGTGGACAAAGAAATTAAGTATGGGGTTCTCTATGTTTTTTCTTGTTAGCAACACTCTGCTGCTTCTGAGTTCATCAGCATTTGCCAAAACTGCAAGCCCTCCAATTCTGAGCCCAACTCCAGCACCAGCACCAGCACCAGATTTCGTGAACCTCACTGATTTGCTCACTGTTGCTGGTCCATTCCACACCTTCCTTGGATACCTTGAGTCCACCAAGGCGCTTGACACTTTCCAGAACCAAGCCAACAACACTGAAGAAGGAATCACCCTCTTTGTACCAAAAGACAGTGCCTTCTCATCTTTGAAAAAGCCCTCTCTAACCAAACTCACCAGTGAACAAATAAAGCAAGTGATCCTCTTCCATGCCTTGCCACATTTCTATTCCCTATCTGACTTCAAAAACCTTAGCCAAGGCAGCTCCACTCCCACATTTGCTGGTGGGGATTTCACACTGAACTTCACTGATAATTCTGGATCAGTGCACATTAGTTCAGGATGGTCAAAGACTAAGGTGACAAGTGCTGTTCATGCCACAGATCCTGTTGCAATATATGAGGTTGATAAGGTGTTGCTTCCTGAGGCTATTTTTGGCACTGATATTCCTCCTGCACCAGCTCCTGCACCAACTCCTGAGATTGCACCTGCTGCAGATTCTCCAACTGAGCAAAGTGCTGAGAGCAAATCATCCTCTCCTTCATCTACACCTGATGGTTCTTCTTCTCACAAGATCCTCAGCTATGGAATCTGGGGCAACCTTGTCTTGGCAACTTTTGGTGTTGTGCTGATGCTCTTGTGATGGGGAATCTATTGAGTATTTTTAAAATTTAGATTATTCTGTTTTTATGTATCTACCTTTGGTGCTATTAATTTGCTTCGATTTGAATCCACTATTTTTTTTGAACATAAAGTGTTATTCAATATATGTATGAGAATGTGATTTCTATCAAACACTTGTTTTAAAAAAGAAGAAAAAAAACAAATCTGGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00218	178979	181118	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000218s00011634.1	PF02469.17	Fasciclin	55	186	1.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	117.369
SRR1783600	control	118.334
SRR1783602	moderate drought stress	41.227
SRR1811619	moderate drought stress	41.604

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	81.614
DRR006520	Root Summer glycyrrhizin high producing strain	79.986
DRR006521	Root Winter glycyrrhizin high producing strain	0.378
DRR006522	Root Winter glycyrrhizin high producing strain	0.367
DRR006523	Root Summer glycyrrhizin low producing strain	33.497
DRR006524	Root Summer glycyrrhizin low producing strain	32.996
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.064
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.238

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	188.432
SRR2868004	Drought Stress (root)	110.238
SRR2967015	Control (root)	92.051

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.048
SRR9715740	Leaf	3.323
SRR9715741	Leaf	6.887
SRR9715739	Root	47.834
SRR9715742	Root	39.348
SRR9715743	Root	42.486

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.909
SRR8749028	MeJA induced 9h	28.602
SRR8749029	MeJA induced 9h	45.469
SRR8749030	Uninduced	4.196
SRR8749031	Uninduced	0.477
SRR8749032	Uninduced	7.405

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	137.648
SRR8400027	Control - Root	144.005