Gene detail

Gene detail information of Glyur000218s00011627

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G59950.1	1.00E-68	NAD(P)-linked oxidoreductase superfamily protein
NR	BAA13114.1	0	polyketide reductase (GGPKR2) [Glycyrrhiza glabra]
COG	NP_441722.1	6.00E-43	aldehyde reductase [Synechocystis sp. PCC 6803]
Swissprot	tr\|P26690\|6DCS_SOYBN	4.00E-166	NAD(P)H-dependent 6'-deoxychalcone synthase
trEMBL	tr\|Q96426\|Q96426_GLYGL	0	Polyketide reductase (GGPKR2) {ECO:0000313\|EMBL:BAA13114.1}

Sequence

Transcript Sequence

>Glyur000218s00011627.1
ATGGCTGCTGCTATTGAGATCCCAACAAAGGTTCTTCCAAACAGCACTTGTGAGCTGAGGGTGCCTGTGATTGGGATGGGATCAGCACCTGACTTCACATGTTATAGGCATTTTGACACTGCTGCTGCATATGGGTCGGAGACTGCTCTTGGGGAAGCTTTGAAGGAGGCACGTGACCTTGGCCTTGTCACCCGTGAAGACCTCTTTGTTACTTCCAAGCTTTGGGTCACTGAGAATCATCCCCATCTTGTTGTTCCTGCTCTCCGCAAATCTCTCGATTCTCAACCCGGAAAGTTTTCATTCCCGATTCAGGCGGAGGATCTCTTGCCATTCGATGTGAAGGGTGTGTGGGAATCCATGGAAGAGAGCTTGAAACTTGGCCTCACAAAGGCCATTGGAGTCAGCAACTTCTCTGTCAAGAAGCTTCAAAATCTGCTGTCTGTGGAGATGAACCTTGCATGGCAACAGAAGAAGCTTAGGGAGTTCTGCAATGCAAATGGGATAGTCCTAACTGCATTCTCACCTCTGAGGAAAGGTGCAAGCAGGGGTCCAAATGAAGTGATGGAGAATGATATGCTAAAAGGGATTGCAGAGGCTCATGGAAAGTCCATAGCACAGGTCTCTCTGAGATGGCTCTATGAACAAGGAGTCACCTTTGTGGCCAAGAGCTATGACAAGGAAAGGATGAACCAAAACCTGCAGATCTTTGATTGGGAATTGACAACAGAGGATCACCAAAAAATAGATCAAATCAAGCAGAACCGTTTGATCCCTGGACCAACCAAGCCCCAACTCAATGATCTCTGGGATGATGAAATATAAAAAGTCACCAATCACCATTCATGTTTGCCTCCAATGGAGTCTATCTTTTTTTTTTTTCTTCCTGTTTTGGGTTATATTATACTTGTTGTTCATTGTGGTCAACATGTATTATGTAGAGCTTTGAATTTGCTCTCTCTTTCTAGTTCGGGTCAAAATAATAACAATAATAATTGATTTCACATTTCGTTTTTTTTATCCAAGTTGTTTTACACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00218	148924	150805	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000218s00011627.1	PF00248.16	Aldo_ket_red	35	252	5.30E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	119.301
SRR1783600	control	120.627
SRR1783602	moderate drought stress	109.858
SRR1811619	moderate drought stress	108.125

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.706
DRR006520	Root Summer glycyrrhizin high producing strain	12.653
DRR006521	Root Winter glycyrrhizin high producing strain	456.316
DRR006522	Root Winter glycyrrhizin high producing strain	444.053
DRR006523	Root Summer glycyrrhizin low producing strain	114.854
DRR006524	Root Summer glycyrrhizin low producing strain	115.059
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.676
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.466

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	427.821
SRR2868004	Drought Stress (root)	721.922
SRR2967015	Control (root)	718.903

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	161.213
SRR9715740	Leaf	54.422
SRR9715741	Leaf	358.633
SRR9715739	Root	185.983
SRR9715742	Root	187.887
SRR9715743	Root	190.316

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	270.436
SRR8749028	MeJA induced 9h	405.749
SRR8749029	MeJA induced 9h	175.868
SRR8749030	Uninduced	1751.101
SRR8749031	Uninduced	1644.815
SRR8749032	Uninduced	884.917

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	354.540
SRR8400027	Control - Root	222.593