Gene detail information of Glyur000218s00011622 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27820.1 | 3.00E-37 | Ribosomal L18p/L5e family protein |
| NR | XP_006574357.1 | 2.65E-72 | PREDICTED: uncharacterized protein LOC100526952 isoform X1 [Glycine max] |
| COG | YP_003693393.1 | 8.00E-13 | 50S ribosomal protein L18 [Starkeya novella DSM 506] |
| Swissprot | tr|P23407|RK18_CYAPA | 3.00E-06 | 50S ribosomal protein L18, cyanelle |
| trEMBL | tr|I1JJR9|I1JJR9_SOYBN | 1.00E-72 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G47730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00218 | 129142 | 131242 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000218s00011622.1 | PF00861.17 | Ribosomal_L18p | 87 | 180 | 6.90E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.778 |
| SRR1783600 | control | 39.695 |
| SRR1783602 | moderate drought stress | 45.382 |
| SRR1811619 | moderate drought stress | 45.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 50.464 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 50.585 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 65.531 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 64.028 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.904 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.040 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.097 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.651 |
| SRR2868004 | Drought Stress (root) | 25.939 |
| SRR2967015 | Control (root) | 30.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.135 |
| SRR9715740 | Leaf | 22.003 |
| SRR9715741 | Leaf | 19.782 |
| SRR9715739 | Root | 39.605 |
| SRR9715742 | Root | 35.133 |
| SRR9715743 | Root | 32.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.796 |
| SRR8749028 | MeJA induced 9h | 11.386 |
| SRR8749029 | MeJA induced 9h | 29.871 |
| SRR8749030 | Uninduced | 8.483 |
| SRR8749031 | Uninduced | 7.562 |
| SRR8749032 | Uninduced | 12.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.867 |
| SRR8400027 | Control - Root | 30.604 |