Gene detail

Gene detail information of Glyur000218s00011620

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17465.1	6.00E-127	ribosomal protein L3 plastid
NR	XP_004491593.1	0	PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_002497200.1	6.00E-68	50S ribosomal protein L3 [Methylobacterium nodulans ORS 2060]
Swissprot	tr\|Q9LRN8\|RK3B_ARATH	9.00E-162	50S ribosomal protein L3-2, chloroplastic (Precursor)
trEMBL	tr\|V7BRX9\|V7BRX9_PHAVU	9.00E-180	Uncharacterized protein {ECO:0000313\|EMBL:ESW20757.1}

Sequence

Transcript Sequence

>Glyur000218s00011620.1
CAACAGCTAAACCTAGAAGAGAGAGAGAGAGAGAGAGGAGAGAGAAGAAGTAAAAAACTCGTGACTGCTCCATCACCGTCGACAGCTCCATTCTCCCCACTGTGTCAGACGGTTCCGATCAGTCCACGCCGCCGGTGTGTGCCATGCTGGCCCTTTCGAGAGNCCTGGTTTCTCGTCTGCAGCAACATTTTGCTATCTCCACCACCACCACCACCCCCACACCCCTTTCGCCGCTTCGATTTTTGAGGGGATTCAGTTCCGATGTGGAGACCACACGGGTTATTGAGGCAAAGGCCAGTGTTATGNCCCCGAATTCGAAACGAACTGGGGTCATNGCTGTCAAGTGTGGAATGAGTGCTCTTTGGGATAAGTGGGGTGCCAGAATCCCAATCACTGTTCTTTGGGTCGATGATAACATTGTCTCTCAGGTCAAAACCCCTGAGAAGGAAGGCTTCTGTGCTCTCCAGATTGGTTGTGGACAGAAGAAGGAAAAACATTTGACCAAGCCCGAAGTAGGTCATTTTAGGGCTCAAGGAGTTCCAATGAAGAGGAAGCTTAGGGAGTTTCCGGTGACAGAGGATGCACTTCTTCCTGTCGGTACAGAGCTTAATGTTCGCCATTTTGTTCCTGGACAATATGTTGACATCACAGGAATCACAAAAGGAAAAGGNTTTCAGGGTGGGATGAAGCGGCATGGATTTAAGGGAATGCCAGCATCCCATGGTGCATCAAAATCACATCGAAGCATTGGTTCAACAGGACAAAGGGATGATCCTGGAAAGGTTTTTAAAGGTAAAAAGATGCCTGGGCGAATGGGTGGGGAGCAAAGAACAGTTAAAAATGTATGGGTCTACAAAATTGATCCAGCAAGGAATTTGATGTGGGTGAAAGGCCAGGTCCCAGGAGCCACAGGGAACTTTGTTTTTATAAAAGATGTTGTCTATGAAAAACCTGACATATCTCTACTTCCTTTCCCGACTTACTTTGTCCCAGAAGATGAAGATATAGATAATTTGAAACCTTTGGTTGCTGATCATGGGGATGTGGATCCATTTATGGTTACCGATTGAAGAGATAGTTCAGAAGCCGGGTTATTCATGCTAGTTTTTCTTCCTGCAATCATGTTCTTTTATTTGAATATATGTGGCAGAGTGAGAATTTTGAGGAACCATCCAAGGATGATTTTTCACTTAAATCCTTTACCGGAAGCTCTAGGGTTACATTCAACAATTCTAAATTAAGATTGGGCAAACATGGCTGTTTTGAGTCCTACAAATAAGTGTGGAGACTTGGAATTAATGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00218	120066	123662	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000218s00011620.1	PF00297.17	Ribosomal_L3	100	263	4.60E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.598
SRR1783600	control	6.308
SRR1783602	moderate drought stress	7.761
SRR1811619	moderate drought stress	8.377

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.147
DRR006520	Root Summer glycyrrhizin high producing strain	18.958
DRR006521	Root Winter glycyrrhizin high producing strain	15.397
DRR006522	Root Winter glycyrrhizin high producing strain	14.791
DRR006523	Root Summer glycyrrhizin low producing strain	6.058
DRR006524	Root Summer glycyrrhizin low producing strain	5.664
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.424
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.497

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.010
SRR2868004	Drought Stress (root)	17.289
SRR2967015	Control (root)	21.043

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.197
SRR9715740	Leaf	9.589
SRR9715741	Leaf	6.399
SRR9715739	Root	4.194
SRR9715742	Root	7.348
SRR9715743	Root	5.662

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.067
SRR8749028	MeJA induced 9h	23.057
SRR8749029	MeJA induced 9h	28.310
SRR8749030	Uninduced	18.023
SRR8749031	Uninduced	9.695
SRR8749032	Uninduced	9.737

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.488
SRR8400027	Control - Root	12.161