Gene detail information of Glyur000218s00011618 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07810.1 | 3.00E-125 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | KHN43959.1 | 0 | DAZ-associated protein 1 [Glycine soja] |
| COG | YP_003709088.1 | 2.00E-13 | RNA-binding protein [Waddlia chondrophila WSU 86-1044] |
| Swissprot | tr|Q8W034|RNP1_ARATH | 3.00E-73 | Heterogeneous nuclear ribonucleoprotein 1 |
| trEMBL | tr|V7BDF1|V7BDF1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW14501.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00218 | 109770 | 114404 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000218s00011618.1 | PF00076.17 | RRM_1 | 8 | 69 | 4.50E-17 |
| Glyur000218s00011618.1 | PF00076.17 | RRM_1 | 108 | 174 | 6.00E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.442 |
| SRR1783600 | control | 19.464 |
| SRR1783602 | moderate drought stress | 14.619 |
| SRR1811619 | moderate drought stress | 14.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.846 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.628 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.644 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.962 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.358 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.756 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.172 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 61.908 |
| SRR2868004 | Drought Stress (root) | 43.158 |
| SRR2967015 | Control (root) | 38.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.215 |
| SRR9715740 | Leaf | 18.418 |
| SRR9715741 | Leaf | 19.392 |
| SRR9715739 | Root | 13.200 |
| SRR9715742 | Root | 30.430 |
| SRR9715743 | Root | 26.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.099 |
| SRR8749028 | MeJA induced 9h | 13.162 |
| SRR8749029 | MeJA induced 9h | 16.690 |
| SRR8749030 | Uninduced | 9.213 |
| SRR8749031 | Uninduced | 10.584 |
| SRR8749032 | Uninduced | 9.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.886 |
| SRR8400027 | Control - Root | 44.857 |