Gene detail information of Glyur000218s00011614 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48130.1 | 2.00E-179 | Phototropic-responsive NPH3 family protein |
| NR | KHN46913.1 | 0 | BTB/POZ domain-containing protein [Glycine soja] |
| Swissprot | tr|Q9LUB9|Y5813_ARATH | 0 | BTB/POZ domain-containing protein At5g48130 |
| trEMBL | tr|I1M688|I1M688_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G00980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00218 | 99978 | 103497 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000218s00011614.1 | PF03000.9 | NPH3 | 265 | 512 | 1.90E-57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.064 |
| SRR1783600 | control | 5.109 |
| SRR1783602 | moderate drought stress | 5.264 |
| SRR1811619 | moderate drought stress | 5.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.182 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.377 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.766 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.832 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.667 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.561 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.034 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.209 |
| SRR2868004 | Drought Stress (root) | 4.033 |
| SRR2967015 | Control (root) | 2.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.539 |
| SRR9715740 | Leaf | 0.680 |
| SRR9715741 | Leaf | 0.115 |
| SRR9715739 | Root | 0.448 |
| SRR9715742 | Root | 0.806 |
| SRR9715743 | Root | 0.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 86.187 |
| SRR8749028 | MeJA induced 9h | 59.433 |
| SRR8749029 | MeJA induced 9h | 82.217 |
| SRR8749030 | Uninduced | 0.848 |
| SRR8749031 | Uninduced | 1.692 |
| SRR8749032 | Uninduced | 1.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.731 |
| SRR8400027 | Control - Root | 5.602 |