Gene detail

Gene detail information of Glyur000218s00011611.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G04880.2	2.00E-65	zinc-dependent activator protein-1
NR	XP_003518571.1	0	PREDICTED: WRKY transcription factor 1-like [Glycine max]
Swissprot	tr\|Q9SI37\|WRKY1_ARATH	5.00E-72	WRKY transcription factor 1
trEMBL	tr\|I1JJR0\|I1JJR0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G47650.1}

Sequence

Transcript Sequence

>Glyur000218s00011611.1
CTATCTCTTTCTGTTTTATCTTTTTGTATTTTATTCTTAACATGTAGTAGAAGTAGTAAAATTGGTGTTGTTTTTCTTTTTCTTGTTTTCTTATTTGTAATTGAGGTTTGAACAATCAAAAGCACAGTGTTTGTTCAAGTCCGANATTTCAGTATATTCTTGGAAGCACTAGACCTGTTTCCTTTTGATATATAAGATAGTTTGTTCACATGGTTTCTTCGGAAGAAAGTGCTGATCACAATGTGTCTTCTGATAAAGTACAGCAGAGAGTGAGTCCTCAGAGGGATATCACATTGTCACAAGGGAATCATGATACTGAAATTCATTTGTCCAATCCTGAGGGAGCAAGAAGTATTCCTTCTATTGTGGCCAAAAACGAAGTGAAGGATTCTGATGCTACTGCTTGTGCCTTGCAATCAGATCAAGAAGGAAGAGCACACTCTTTGCCGCGTGAGAAACATTTGCAGATCCCTGATTCTCTTTTGCATGAATTGCCTCCGTCGCAATCTGGTCAGGACAGTCCCTCTATAATACGTGAAAAGGTATCAAAAGATGGCTATAACTGGCGAAAATATGGCCAGAAACATGTTAAGGGGAATGAATTTATAAGGAGCTATTACAAGTGTACACATCCAAACTGCCAGGCCAAGAAGCAACTGCAGCAGTCACATAATGGGCAGATTACAGATTCCATTTGCATTGGCCGACATAATCATCCTAGACCTCAATCGAACACCATAGTACCGGATGACCGTGTGCTGCCTGTTGTTGAAAAGGAACCACACAAACCCTCTTTGGCCAATGTGGAAGCTGCACATGTACAATTGACGGCAAAGTATGAGGTTCATAACTTGGAGGATCCTGAGTCAAAGCGGCTGAAGAAAGACAGTAGTAACGTGGATGTCACTGGAGTTGACATGTCAACTTGTGAATCTCGTGTTGTTGATTTTGTAAATGATGGGTATCGCTGGCGCAAATACGGGCAGAAAATGGTTAAGGGGAATGCAAATCCAAGAAGTTATTATCGATGTTCAAATCCTGGATGCCCTGTCAAAAAGCATGTTGAAAGAGCCTCTCATGATTCAAAAATTGTCATAACTACCTATGAGGGACAACATGATCATGAAATCCCCTCTGGAAGGAGTGTCACTCATAATGCTGCTACAAACACACACACAATGGACATTGATGGCAAGCTGGGAACCAAATCGGGAGGTAATACTGTTTGTGTTGATACAGGGGAACGCAACTGTTTGGACTCAAAAAGCAGATTAAATAAGCGACCAAATGAGGAGTCAATTACTAACTCAGAGGCTGGTGATATGGCTGAGTTTCGGGTGATCAGCCTTCACGATTCTGTCAGCAATGACACGGTATGCCATTCAAGTTCCAAAGTTCCATGTAGATCAAATGAACATGCGAAAGATGAGGTAAAAACTACATCAGAAGGAAGTAAGGATTGCCTTAATGTGGTTGCTGGTCATGATACTCCTAGCACAATAAGTGAATTTAGTAAGCAGTCAACATCTGATGCAGAACCTGTCCAAAGCTAAATTGCATTGTTTTTCGAAGCTGCAGCTAGTTACTGAAGAGCATAAAAGTTGGCAATGACATAGGATATACAGATATATTGTGGGATTAAGATTCCTATTTGTATTCTAACTTTTACTTTTCCCTTCTTCTAGCTCACTCTTTTCTTGTCTATTGGCAGGTTGACTAAATATGCAAATCACAATTAATACTACATTGGGTATCATTATTATTAGGGATAAATAAGTGAAGATGTATATTTTGGTACACNTGTATCTAAATTCCAACATATTGTGACTCACATGTAATTCTTGTTTTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00218	85315	88868	-

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000218s00011611.1	PF03106.10	WRKY	114	170	4.80E-24
Glyur000218s00011611.1	PF03106.10	WRKY	248	306	1.20E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.520
SRR1783600	control	10.429
SRR1783602	moderate drought stress	14.879
SRR1811619	moderate drought stress	14.586

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.393
DRR006520	Root Summer glycyrrhizin high producing strain	16.349
DRR006521	Root Winter glycyrrhizin high producing strain	17.399
DRR006522	Root Winter glycyrrhizin high producing strain	17.057
DRR006523	Root Summer glycyrrhizin low producing strain	18.191
DRR006524	Root Summer glycyrrhizin low producing strain	17.827
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.446
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.379

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.866
SRR2868004	Drought Stress (root)	27.703
SRR2967015	Control (root)	28.778

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.226
SRR9715740	Leaf	23.407
SRR9715741	Leaf	22.255
SRR9715739	Root	1.584
SRR9715742	Root	6.982
SRR9715743	Root	7.061

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.695
SRR8749028	MeJA induced 9h	18.941
SRR8749029	MeJA induced 9h	18.589
SRR8749030	Uninduced	21.649
SRR8749031	Uninduced	38.299
SRR8749032	Uninduced	24.066

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.237
SRR8400027	Control - Root	18.244