Gene detail

Gene detail information of Glyur000218s00011610.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G48150.2	GRAS family transcription factor
NR	XP_003617966.1	Chitin-inducible gibberellin-responsive protein [Medicago truncatula]
Swissprot	tr\|Q9LDL7\|PAT1_ARATH	Scarecrow-like transcription factor PAT1
trEMBL	tr\|G7KEQ0\|G7KEQ0_MEDTR	GRAS family transcription factor {ECO:0000313\|EMBL:AET00925.1}

Sequence

Transcript Sequence

>Glyur000218s00011610.1
ATGCAGGCATCTGAGCAACATAGAAGTTCAAGTATGTACTATCAACCATTGCAACAAATTGAAGCCTACTGCTTGCCACAGTATCGAAATCTAAATCATNATCAGCTATACTACAATGATGGAGGCCATGGAAACCACTACTCCACTCCAAGTTCTTCTGAACTTTACTGCACATTGGAGTCATCCTCCGCAACTGGCAGTTTCACTGTTTACAACTCCCCTTCAACTGTTAGTTTCTCACCTAATGGCAGCCCGATATCGCAGCAAGATTCTCAGTCATATGATCCAACCGACCGGTATCATTCCCCTGACAATACCTATGGCTCTCCAAAGAGTGGATCCTGCATAACCGACGATTTGAGTAGCTTCAAGCACAAGCTGAGAGAGTTGGAAAGTGTGATGCTTGGCCCTGACTCTGATAATATTGATAGTTATGACAGTGCAATCAGCAATGGAACCAATTTTGCTTCACTTGAGATGGACAGTTGGAGACAAACAATGGTAGCAATTTCAAGTAAGAACCTAAAGCACATCCTCACTGCATGTGCCAAAGCAATTGCAGACAATGATTTGCTAATGGCACAGTGGCTGATGGATGAATTGCGGCAGAAAGTTTCGGTTTCTGGTGAACCGATTCAAAGGTTGGGAGCATACATGTTGGAAGGACTTGTCGCGCGATTGGCTGCCTCCGGGAGTTCAATCTACAAAGCTTTGAGATGCAAAGAGCCAGAAAGTGCTGAGCTTCTCTCCTACATGCACATACTGTATGAGGTCTGCCCTTACTTCAAATTTGGATACATGTCTGCAAATGGAGCCATTGCTGAGGCCATGAAAGATGAGGACAGAGTTCATATAATTGATTTCCAAATTTCTCAAGGAAGCCAGTGGATCACTTTGATTCAGGCTTTTGCAGCTAGGCCTGGAGGGCCGCCCCACATCCGGATTACAGGTATCGATGACTCAACATCGGCTTATGCCCGTGGAGGTGGACTACATATAGTGGAAAAGAGGTTATCAAAGCTTGCTGAGCATTTTAAGGTGCCATTTGAATTTCATGCTGCAGCTATCTCTGGCTGTGATGTTCAACTGCATAACCTTGGAGTTCGACCGGGGGAAGCTTTAGCTGTAAATTTTGCATTCATGCTACATCACATGCCTGATGAAAGTGTCAGCACTCAGAATCATAGGGATAGGCTGTTGAGGTTGGTTAAGAGCCTATCACCAAAGGTGGTGACACTTGTTGAGCAAGAATCTAACACAAACACTGCTGCATTCTTCCCCCGTTTTCTTGAAACTCTGGACTATTACGCAGCAATGTTCGAGTCCATAGATGTGACTCTTCCCCGAGAGCATAAGGAGCGAATCAATGTTGAGCAGCATTGCTTGGCAAGAGACTTGGTTAACATCATAGCTTGTGAAGGGGTTGAGAGAGTGGAACGACATGAGCTGCTTGGGAAGTGGAGGTCAAGATTTGCAATGGCTGGTTTCACTCCTTACCCTTTGAGTTCATTGGTGAATGGTACCATAAAGAAATTGCTTGAGAACTACAGTGATAGATATAGACTTCAAGAGAGAGATGGAGCTTTATACCTTGGTTGGATGAATAGAGATTTGGTTGCTTCATGTGCTTGGAAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00218	82489	84126	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000218s00011610.1	PF03514.9	GRAS	175	545	3.80E-137

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.419
SRR1783600	control	26.091
SRR1783602	moderate drought stress	27.191
SRR1811619	moderate drought stress	27.301

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.870
DRR006520	Root Summer glycyrrhizin high producing strain	24.620
DRR006521	Root Winter glycyrrhizin high producing strain	1.158
DRR006522	Root Winter glycyrrhizin high producing strain	1.084
DRR006523	Root Summer glycyrrhizin low producing strain	35.653
DRR006524	Root Summer glycyrrhizin low producing strain	35.273
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.187
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.022

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.611
SRR2868004	Drought Stress (root)	47.634
SRR2967015	Control (root)	56.745

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.858
SRR9715740	Leaf	6.621
SRR9715741	Leaf	6.694
SRR9715739	Root	26.612
SRR9715742	Root	38.497
SRR9715743	Root	35.329

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.515
SRR8749028	MeJA induced 9h	6.186
SRR8749029	MeJA induced 9h	5.966
SRR8749030	Uninduced	2.494
SRR8749031	Uninduced	0.634
SRR8749032	Uninduced	0.500

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.147
SRR8400027	Control - Root	14.583