Gene detail

Gene detail information of Glyur000218s00011607

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G48160.2	Protein of unknown function (DUF1423)
NR	XP_003519664.1	PREDICTED: OBERON-like protein-like [Glycine max]
Swissprot	tr\|Q84N37\|PVIP_PEA	OBERON-like protein (Fragment)
trEMBL	tr\|I1JJQ5\|I1JJQ5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G47590.1}

Sequence

Transcript Sequence

>Glyur000218s00011607.1
TGTTGTTGCTGTGACTGCATGAATTTCGATCCGTGAACATTTCGAACACCCCTTTCAGCAAATTCTTATTCTTTTTCCTCAAGTGTTGAATTTCAGGGTCAACTTTGTGTGGTGGGTCGTTCAAAATTTGCACCTTTTTCACTTGATCTGCTGTTTGAGGCTCTAACACGAAACAGAAGCCATTGCAAAAAAATGCTCCCTCCNCCACAGCAGTCACGTTTTGGAGGACTGCAAACATCTCTGTCTCTAGTTTCTTCGGATCCTCACCTTTCTCCAGAGGAACCTAGGTCAAACTCTGACAATCTCCGNGAATCTCCTACTGAAAGTGCTAGTTCTCGGGAAACCTGGCCTACTGCCGATGCAATTGCTGCAAAGAAGATGGAGAATGGAAAAGCGGAGATCGATTGCCCCGATCATTCAGTTATTCGTCAGATTTCTAGTGCGGACAAAATTAGTCTTCAGGACATTGCAAGAGAAAGAGTGGATATAATATGTGAAAAAATGCACCGTCTCCCTGAAGAGTTTCTAGAAGAGCTGAAAAATGGACTTCGAGTTATCCTTGAGGGAGGGAATGGCTCACAGCATAGAGAGGAATTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGATCTGATTTAACAGCCAAGACATTGANACGAGCGCATCAAGTGCAGCTTGAAATCCTTGTTGCCATAAATACTGGAATTCAGGGGTTTTTACATCCTAGCATCAGTCTATCACAGACTTCACTGATTGAGATTTTTGTGTACAAGAGATGCAGAAACATAGCTTGCCAAAACCAGCTTCCGGCTGATGATTGTACATGTGAGACATGCACCAACAATAATGGCTTCTGCAACCTTTGCATGTGTGTTGTCTGCAGCAAGTTTGACTTTGAAGTAAATACATGCCGTTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGCGAGCAACTTATCTGCATGGGCCCTTCGGTAAAGAGTGGAGCAGGGCCAAGTGAAATGGTTTTCAGGTGTCAGGCATGCAATAGGACTTCAGAACTGTTGGGTTGGGTTAAAGATGTTTTCCAGCACTGTGCACCATCATGGGATGGGGAGGCCTTAATAAGGGAACTTGATTTTGTTAGTAGGATCTTTCATGGGAGTAAAGACTCACGGGGGAAGAAACTCTTTTGGAAGTGTGATGATCTCAAGGAAAAACTGAAAAGTGGGAAAATGGAATCTAAGGCAGCGTGCAGAGCGATATTGATGGTTTTCCAAGAACTTGACGTGGACTCTCCAAAGAGCCTGGAAAATGCAGAAAGTGGAAGGCTGATTGCTCCACAGGAGGCATGCAATAGAATTGCTGAAGTGGTGCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCCTGGCTCTTGGGACCTGTGATCATGAATTAGCAGACAAGGCCAGAGAAGCAGGAGAACTCAAGATGGACAGGCAAAAAAAGAAGTCACAGATTGAAGAACTGGAGAGAATTGTGAGGCTTAAAAACGCAGAGGCTGATATGTTCCAATTGAAGGCTAATGAGGCTAAACGAGAGGCCGAGAGGCTCCAGAGGATTGCTCTTGCCAAGTCTGATAAATCGGAGGAAGAATACACTAGCAACTATTTGAAACAAAAGTTAAGTGAAGCCGAGGCTGAGAAGCAATATCTGTATGAGAAGATCAAATTGCAAGAGAGTTCTCGCATATCACAGAGCAGTAGTGGCGGTGACCCCTCTTCAATGCTGATGTATTCCAAAATCCATGATCTCCTCTATAGTGTTCCTCCCAAGGCAGACAGTCAATCTAATGAGTGCCACCCTTTCCGAACAAACCCATGAGTACTGCTTTAGTATATGTTGTAATCTTTTATATATTATTGTAGCGATGTCATGTCATTCTGTTACACAATTGATGAAAGAGTCACTCCAATTCCATTAGATTCGAGACAGTGTAAGCCTTTGTATAGGGAAGAGGTACCTAGTAAGGGCTTAAAATCAATTTGAAACTAGGCTTGTTCTATGCAATATATGTATGAATATGCTTTTGTGACGAATTATTGATTGTTGATTGTTGCTTAATTTGTGAAATCCAATTTGTTGCTCAAATATGTTTACATTGTACCGATGAGCTAGTCTTGTTTTATATGTTCCTTGTGAGTTGGAATTTTGAATCAGTACTAGAGGCTAAATAGATCTTATGTTGGAGACAAAAGTAAAAGTGATGTTTTGTTATTTGATAAAACAGCGCGACATTACAGTTGAATGGCAAGTACATCTACATCTCTCTGCCTCAATGGAAAGGTGGGATACTCATCTTTTTGACAGATGGGGCTGGCTTTGTCACATTACCATTCTTTGAGGGAGGATCCTTAGGTCCCGGAGCTTGGTGAAAAGGAACAGTGTTGTCAAATGTCAAAGCAGCACTGATTCCGTGGCACCTTATGAAAGAGCTTAGGCACACATTTGGTGTGACAATCCTTGCATTGTTGACAAACAAGCCGCCCGATCTCCCGCTGTTGTTGGTGATATTGATCACCCGGGTCGGAATGCTGGAGGGAACCACAGAGCCATTTGGGAAATGTAACAGGTGAGTGAGCAGCAATGGTGTTGGAATGGAATGGCTGAGTATGAAATCNTGGAGCTGATCTGGGGTTAATGTTAACTGAGACAACTCTTCATCACTTGGCATTAGGAATGTCAGTTCATTGTTTTGCAGTGAGTTGGGAAGGCTGTTGAGGATTTTGAGGAGGATGACGAATCCGTAGTAAGACCGGCTTCTCATGTCGATCATGGCTGCCTGCAGGTCTGTTTGGTTGAATGAAGTTGTGGACTGAGATTCACCAACTGCTAAGAGTGTAAGAAGGAGCATAAACAAGAGAGCCATTATTAGGGGAAAAGATTAGGTTCTGCTTGAATGTCTAGTGTTTGTGTAACAATGAATGGAATGTAATCTCACTTTGCTTGGTATTTATAGCCACATTAATAATTCATGGCTATGTTACCACACTTTTTTCCATTTCTAGGTAGGTGGCGTGCTGTTTGTGCATGAAGGGGGTGCTGAGAATGCAGTAGTTAGCCCAGAAAGCTGAGAATGTGTTTCTGAGGAAGGNGAACAAAAATTAATTAATAATACCAACAGATATTGATATTGTTTTAAGTGGCGATGAGTTTGATTTTTCTTATAGGTCTCGGCTTTAGATCTTGTGAGTGAAAAAATTAAGCAATGGGAGAGCTTTGTTCACCTGACTCAATTTTGATTAGTCAGAGTTTAATGTAATTTTTAGATACCGAGACACAAAAAAAGAAAACAATAATGAAGCATTTTTATTAGACATCCTGAAAGTTTAGTCAGGGTCCATCTTATTACCAATTTATGTTTTTCATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00218	45429	49658	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000218s00011607.1	PF07227.6	DUF1423	93	546	2.00E-215

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.166
SRR1783600	control	16.192
SRR1783602	moderate drought stress	12.240
SRR1811619	moderate drought stress	12.061

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.940
DRR006520	Root Summer glycyrrhizin high producing strain	28.566
DRR006521	Root Winter glycyrrhizin high producing strain	13.992
DRR006522	Root Winter glycyrrhizin high producing strain	13.695
DRR006523	Root Summer glycyrrhizin low producing strain	50.815
DRR006524	Root Summer glycyrrhizin low producing strain	51.100
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.019
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.016

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	56.263
SRR2868004	Drought Stress (root)	67.587
SRR2967015	Control (root)	57.932

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.522
SRR9715740	Leaf	24.992
SRR9715741	Leaf	30.860
SRR9715739	Root	6.587
SRR9715742	Root	27.789
SRR9715743	Root	25.176

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.968
SRR8749028	MeJA induced 9h	32.464
SRR8749029	MeJA induced 9h	34.132
SRR8749030	Uninduced	26.669
SRR8749031	Uninduced	30.526
SRR8749032	Uninduced	24.764

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.043
SRR8400027	Control - Root	36.894