Gene detail information of Glyur000218s00011602 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G05100.1 | 5.00E-119 | photosystem II light harvesting complex gene 2.1 |
| NR | NP_001241179.1 | 2.59E-174 | uncharacterized protein LOC100815789 [Glycine max] |
| Swissprot | tr|P27520|CB215_PEA | 1.00E-172 | Chlorophyll a-b binding protein 215, chloroplastic (Precursor) |
| trEMBL | tr|C6TD73|C6TD73_SOYBN | 1.00E-174 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G01130.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00218 | 28026 | 29831 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000218s00011602.1 | PF00504.16 | Chloroa_b-bind | 68 | 220 | 1.10E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.668 |
| SRR1783600 | control | 1.673 |
| SRR1783602 | moderate drought stress | 1.891 |
| SRR1811619 | moderate drought stress | 1.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.124 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.627 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.425 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.714 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.564 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.882 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1326.414 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1367.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 96.151 |
| SRR2868004 | Drought Stress (root) | 126.057 |
| SRR2967015 | Control (root) | 52.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2374.523 |
| SRR9715740 | Leaf | 2022.428 |
| SRR9715741 | Leaf | 1759.892 |
| SRR9715739 | Root | 0.619 |
| SRR9715742 | Root | 3.396 |
| SRR9715743 | Root | 3.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.912 |
| SRR8749028 | MeJA induced 9h | 2.404 |
| SRR8749029 | MeJA induced 9h | 3.292 |
| SRR8749030 | Uninduced | 0.550 |
| SRR8749031 | Uninduced | 0.010 |
| SRR8749032 | Uninduced | 1.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.004 |
| SRR8400027 | Control - Root | 3.037 |