Gene detail

Gene detail information of Glyur000218s00011601

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G63380.1	2.00E-87	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
NR	XP_003617947.1	0	Calcium-transporting ATPase [Medicago truncatula]
COG	YP_724230.1	1.00E-42	calcium-translocating P-type ATPase [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q9LY77\|ACA12_ARATH	6.00E-112	Calcium-transporting ATPase 12, plasma membrane-type
trEMBL	tr\|G7KEN1\|G7KEN1_MEDTR	0	Cation-transporting ATPase plant {ECO:0000313\|EMBL:AET00906.1}

Sequence

Transcript Sequence

>Glyur000218s00011601.1
ATGTCCTCAGCCTCAGCCTCAGCCTCAGCCTCAGCTGGTGCCAACATAGAGCTTGGTGCTAGCTTTCTCCCCACAAGCAAGTACAGAAGGATATGGCGTAGAAGCTTAATCATAAGATTCTTCTTCATCTCCTTGAAGAAGCCAACAAGTGCTAATGGCAGCTATGAATCTCCACCAATATTATCATCACTACCANACACCTCATTATTGCCTCCTCCTTCTAGAACCTCCTCTGCCAAATCTTCTGTTGCAATTGATATAGGCTCTCATGCCCAAGAAGAAGAAGAAGAAGAAGACACAGAAGAACAGTGCATTGCTGGAATTGTGGAGGAGCAAGAGCATGGTGGGGTTGACCGCAAGAATGGGGACCTTGGGATGTTGGACACCCCTGTGGCTGTGGCTGTTCATGGAACAACAAGCTTCTCTGGCTTTCTATGGAACACCTGCAAGCACAATCGTTACACAATTTCAATGCTGCTGATCTCTGCNGCATTGTCCTTTGCCACTGAGTTCATGGAGGAGGGACCCAAGTATGGTTGGCATGATGGAGTTGCCATAGTTTTTGCTGTCCTACTCTTGCTTGCATTCTCTTCAGTAACAAGCTTTTGGCGTGAAAGAGAAATGAGGAAATTGGCAAAGAGAAGCTCAATGAGTTGTTATTATAATCCTGAAAAGAGAGGCCTCTTGGAGGGTNTAATTGAGAAGCCAATTTCTTGCATTGACAAAGCTTCTCTTTTTGTCTTTCCACTGGTTGCACTTGTGGTGTTCATTCGCCTGATTTGTAAAAANGATGGAGACAATGGTGGGTTGCCAGAGATTAAAGGGAATGTCTCAGTTGGCTCGTTGATGAAAGTCCTTGAGAGAGTTCTCTTGAGACCACCAGGGAGGATTTCAATTTTGACAGGTCTTTTTACTGCTGTGGTAATGTGTGTGCAACATGGAGTGCCACTTGTTGTTACTATTTCTCTCAATTACCAGATTGATGAGGTAGTGTCANACCAAGATGCAGTTTTCAATGACTCATCAGCTTGTACTACAATGGGGTTGGTAACTGTCATCTGCATCGATGTATCCGGTGAGCTCATATCAAAACCAATGGAGGTTAGCAGAATCTGGATGGGGGAGACAGATATCAGCAGCAAGGTAGAGGAATCAGAAACAGATCCAATTGTACTTGACATGCTTAAACAAGGAGTTGGTTTATCAGTTTTTGCACCTGAACTTACTCTTTCTCCCATGTCCAATTCACTTGTTGCTTGGGCTGAAACAACATGGAAAAATGACATCAAGTCTTTCTCAGAAAAAATTGTAATTCTTAAGCATAGAAAGTTGGATTCTGACAAACAAGGCAGTGGGGTTTTGGTGAGAGAAGTTGGGGTCAGTGACAGTGAACAAGTTCTTCATTTGCACTGGAGTGGGGCAGCATCCACAATATTGGAAATGTGTTCACAGTACTATGATAGTAAAGGAGAATGCCATGCCATGGAAAATCAGAAAATCAAATTTGGGCAGGTGATTAAGGAGATGGAGGATAGTGGCCTTAAACCAATTGCATTTGCTTATAAGCAAACAAAGGTGCAAGAAGAACTTGAGCAAGATGAATTGACCTTGTTAGCACTGATAGGTCTCGAATACAAATCTCAAGAATCGACAAAATTAGCTTTGGAAAATCTCAGGAATACTGGAATACAGATCAAGTTGGTCTCAGAGGATGACATCATGTTAGTGAAAGACATAGCTTGTAAACTAGGAATAATAGAAGTGCCAGAAGATGTGGATGGTCATGGTATTGTTCTGCTTGAAGGAAAAGAACTACAAGATTTGAATGACAAAGCAAGACTAGAGAAAGTGGACCAAGCCATTGTAATGGGAAGTTTCAGTCCTGAAGACAAGCTTCTCTTGGTACAGTGCTTGCAGGACCAAGGTGATCATGTGGTTGCATTTGTTGCAGAAAGGTTGATGACTAACCACACTTCACAAGTTCTAAAGGTAGCTGATGCAGGGATAGTTCAGAATTCTCTGAGCAAGATAATGGACAGAGAGAGTTGTGGTATATCCATCACCCATTTCAGTGCATTGAAACCAATTGTGAGGGCTGGCAGAAGTAAATATCACAACATTCAGAAGTTCATTCAACTTCAGCTGACAGTTAGCATATCAGGTTTACTCATAACCTTGATCACAACAATATCTACAGGAAAATCCCCTCTAACAGCAATCCAATTGATTTGGGTGAACATGCTAATGTGCATTCTGGGTGGCCTAATGATGTCAATGGAGTTGAGTAGAGAGGAAGAGCTTGCCAAACAACCATCTGAAAGGAGGAATAAGCCAATTATAACCAAAGGAATATGGAAAAACATAGTTATTCAGGTTTTGTACCAGGTTGTTGCATGCATGGTACTTGAATTTGGGGGACATGTTACTGAAAGTGAAAGGGGAGTTAGGAAAGCCATGATCTTCAACACATTCCTATTATGCCAGATCTTCAATCTGCTCAAGACCATGGATCTGTTGAAAAGGGAAGTTTTCAAGGTAGTTGTTCAGAGCTACTGTTTCTGGGTGGCTTTGGGTGGTTGTCTTGTTGTGCATGCTATGGTGATTGAGTATGCAAAAGGCCTAGCAGATTGCATGAAGCTGAATGCTACTGAATGGGGTATCTGTGTCCTGGTTGGTGCTCTTTCATGGGTACTTGAATGGGCCTTGAACAATAACAAGGTTCTTCCAGTTATTCTCAGCACCAATTGGTTCCATCTTTCTTGGGGTTCTACATTTATGATGCTCCTTTTGTTCCCTGTAGGACTAATAGGCATGACATTTCGGTTAGTGGCACTGGCAAAATAATCTTCATGTAATCATGACATGTCATGTGTACATACTACTTTACTAGCTGCTGCATAGATCATATGTATATATGCTGTATATATAATCATGCATGTGTATGTATATAAACAAATTAATTTCATTTGCGGTCACTTCACATTACAATATTTTTAAATAGACAATTTTCTCTGCAACTTTTCTTGTGCTGCATTTGCTCCATATCTCACTCCCTGGTTACAAAGTTCACTTGAAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00218	23666	27205	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0000166 nucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000218s00011601.1	PF00689.16	Cation_ATPase_C	735	899	1.90E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.209
SRR1783600	control	0.167
SRR1783602	moderate drought stress	0.232
SRR1811619	moderate drought stress	0.251

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.983
DRR006520	Root Summer glycyrrhizin high producing strain	2.059
DRR006521	Root Winter glycyrrhizin high producing strain	0.712
DRR006522	Root Winter glycyrrhizin high producing strain	0.725
DRR006523	Root Summer glycyrrhizin low producing strain	3.606
DRR006524	Root Summer glycyrrhizin low producing strain	3.712
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.621
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.438

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.144
SRR2868004	Drought Stress (root)	2.765
SRR2967015	Control (root)	3.016

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	122.510
SRR9715740	Leaf	59.389
SRR9715741	Leaf	88.369
SRR9715739	Root	7.047
SRR9715742	Root	31.627
SRR9715743	Root	29.063

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.747
SRR8749028	MeJA induced 9h	31.283
SRR8749029	MeJA induced 9h	18.496
SRR8749030	Uninduced	33.288
SRR8749031	Uninduced	17.330
SRR8749032	Uninduced	11.014

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.226
SRR8400027	Control - Root	4.469