Gene detail information of Glyur000217s00014869.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07900.1 | 6.00E-42 | LOB domain-containing protein 1 |
| NR | AFK47293.1 | 7.63E-77 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9LQR0|LBD1_ARATH | 7.00E-69 | LOB domain-containing protein 1 |
| trEMBL | tr|I3T451|I3T451_LOTJA | 3.00E-77 | Uncharacterized protein {ECO:0000313|EMBL:AFK47293.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00217 | 243893 | 245592 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000217s00014869.1 | PF03195.9 | DUF260 | 66 | 165 | 2.10E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.823 |
| SRR1783600 | control | 6.782 |
| SRR1783602 | moderate drought stress | 5.240 |
| SRR1811619 | moderate drought stress | 5.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.191 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.280 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.519 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.836 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.478 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.583 |
| SRR2868004 | Drought Stress (root) | 3.170 |
| SRR2967015 | Control (root) | 5.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.678 |
| SRR9715740 | Leaf | 1.112 |
| SRR9715741 | Leaf | 0.853 |
| SRR9715739 | Root | 0.865 |
| SRR9715742 | Root | 1.161 |
| SRR9715743 | Root | 0.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.451 |
| SRR8749028 | MeJA induced 9h | 2.703 |
| SRR8749029 | MeJA induced 9h | 3.167 |
| SRR8749030 | Uninduced | 31.807 |
| SRR8749031 | Uninduced | 8.263 |
| SRR8749032 | Uninduced | 19.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.463 |
| SRR8400027 | Control - Root | 13.436 |