Gene detail

Gene detail information of Glyur000217s00014866

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G16880.1	3.00E-164	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004496333.1	0	PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9ZVX5\|PP156_ARATH	0	Pentatricopeptide repeat-containing protein At2g16880
trEMBL	tr\|G7I9N3\|G7I9N3_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AES62230.2}

Sequence

Transcript Sequence

>Glyur000217s00014866.1
TCTCTCTCTCCCCGTGATAATGGGCTATCCACTCCAAGACTTGAAAAAAACCCAACACATCTTGGCCCAATATCTATGAACAGGGCGTCTACACTCTACACTACAGTGAGCGCAATGCAAGGCAAAGCCGTTGCTCTCTGCAGGAGTGTGGACTGTGGCCGTGGTTTGTGGCGTGCAGCTGCCACACTGTTATTCTTTCTTCTTCTCCTTCAATCTTCATCTTGTCGTTAATTCCTTTGTCTGCAACCAAAACCCTACAAAAACCCCATAATACGGAAAATAAAAATAAAAAAGACAACATGACGAGCAATAGCAGCAGCAGCAACAGCGAGGAAGAACAAGTGGTGGAAAGCATAACGAGAATCCTCCGNAGCAGAAGCAGAAGCAGCAGCAGCAAAGACGAGAAGGCAGAGAAGAAGCTGCAACAGTTCCTCCCACACCTAAGCCTNCCACTGGTGTTATCAATCCTATCAAAGAAGCCCCTCCACTCCCAACCCTCAACCCTCATCNCATTCTTCAAGTGGCTCCAATCACACGCCCCCTCCTCCCTCTCCCTCTCCCCTCACCCCCTCCTCACGCTCCTCCCTCCCCTCCTCACTCGCCGCAAGTTCTCCGACGCCAAGTCCCTCCTCCTCTCCTTCATCTCCTCCGACCGCCGCCACTCCCTCCACTCCCTCCTCCTCCGCCCCGACCCCTCCCTCTCCCGCCCCCTCCTCGACACCTCCCTCGCCGCCTACGTCCACTCCCACCACCCCCACCTCGCCCTTCAAATCTTCAACAAGATGAAACGACTCCGTTTTCGCCCCAACTTGCTCACCTGCAACACCCTCCTCAATGCCCTCGTAAGGTCCTCTTCCTCTCACTCCCTTCACCTCTCTAGACAGGTCTTCAAAGACGCCCTTCGCCTCGGCGTCACCCCCAACACCAACACCTTCAACATTCTCATATATGGTTGTTGTTCTGATAACAATTTCCACGAGGCCTTTAAATTGATGAACCAAATGGGGGAGTTTGGTTGCAACCCTGATAATGTCACCTATAACACCATCTTGGATGCGTTATGTAAGAGGAGCCAGTTGTCCAAGGTGAGGGATTTGCTTCTCCTCATGAAGGGTAGTGGGTTGGTTCCCAATAAGAATACATATAATATATTGGTTCATGGGTATTGTAGGTTGAAGTGGCTGAAGGAGGCTGCTGAGGTTGTTGAGATGATGACGGGGAGCGGCACGTTGCCGGATATTTGGACGTATAATACCATGGTGAGGGGTCTTTGTGATGAGGGTAAGATTGACGAGGCCGTTAGGCTTAGGGATGAGATGGAGAATCTGAGATTGGTTCCTGATGTTGTTACTTATAATACCTTGATTGATGGGTGTTTCGCGCACCGGGGGAGCGCGGAAGCGTTTAAGTTGGTGGAGGAGATGAAGGCGAGGGGAGTCAAGCCGAACGCCGTTACTCACAATATTATGGTTAAGTGGTTCTGTAGGGAAGGCAGGATTGACGAGGCGAGCAATGTGATGGCGAAGATGGTGGAAAGCGGGTTTTCTCCNGACTGTTTTACGTATAATACGATGATTAACGGTTATTGTAAGGCGGGAAAGCTGGGAGAGGCGTTTAGGATGATGAATGAAATGGGAAGGAAGGGGTTGAAAACGGATACTTTTACCCTCAACACCATATTACACACTTTGTGCGTGGAGAAGAAGCTGGAAGATGCGTATGAGTTAACTATGAAGGCCAGCAAGCGAGGTTATATTCTTGATGAGGTGACGTATGGAACTCTAATCATGGGGTACTTTAAGGATGATAAAGCGGACAAAGCTTTGAAGCTCTGGGATGAGATGAAGGAGAAAGGGATTGTTCCTAGTGTTGTCACTTATAACACAATAATCAGAGGGTTATGCCTGTGTGGGAAAACTGATCAAGCCGTAGATAAATTGAACGAACTTATAGAGAAGAGTTTGGTCCCTGATGAAGCTACTTGTAACATAATTATTCATGGCTACTGCTGGGAGGGAGCGGTAGAGAAAGCGTTTCAGTTCCATAACAAAATGGTAGATAACACATTCAAACCGGACATTTTCACATGTAACATTCTTCTCCGGGGGCTTTGTAGAGAGGGCATGCTGGAGAAAGCTCTTAAACTTTTTAACACGTGGATCTCTAAAGGGAAGCCCATTGATGTAGTTACATACAATACATTGATATCCACCTTTTGCAAAGAAGGGAGACTTGAGGATGCCTTTGATCTTATGACTGAAATGGAGGGGAGAAAATTGGAGCCTGACCGGTATACTTATAATGCCATAATCAGTGCGCTTACTCATGCTGGTAGAACTGAGGAAGCAGAGAAAATTGTGTCAAAACTTGGAGAGGTAGGGCAGGATATGAAAACTCCGGACACTTCCCCTGTGCCTGGTTCAGGTGATATGATGTACTCAGAGCAAATAAGTAATTTGTGTACTCAGGGGAAGTACAAGGACGCAATGAAACTATTTCAACAGGCAGAGCAGGAAGGAGTTAATTTAAATAAATATACATATATCAAGCTAATGGATGGGCTCTTGAAGAGGAGAAAAAGCATATCGAAGGATGCGTCCTTCAACAAAAGGCGCCCTCTCATATCCCAGGTTTTGTCCTCCACTGATGTCCAGTCAGACCAACCATGTGTACCCCATGCCAATCAGAACAATTTGATAAATCTCACATCCAGCGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00217	220517	224818	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000217s00014866.1	PF13812.1	PPR_3	143	169	0.016
Glyur000217s00014866.1	PF13041.1	PPR_2	207	256	5.80E-17
Glyur000217s00014866.1	PF12854.2	PPR_1	274	305	1.20E-09
Glyur000217s00014866.1	PF12854.2	PPR_1	309	341	2.10E-12
Glyur000217s00014866.1	PF13041.1	PPR_2	347	396	1.90E-17
Glyur000217s00014866.1	PF13041.1	PPR_2	420	465	6.20E-16
Glyur000217s00014866.1	PF13041.1	PPR_2	488	535	1.30E-16
Glyur000217s00014866.1	PF13041.1	PPR_2	557	606	3.40E-14
Glyur000217s00014866.1	PF13041.1	PPR_2	628	674	1.60E-18
Glyur000217s00014866.1	PF01535.15	PPR	717	741	0.9

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.858
SRR1783600	control	2.936
SRR1783602	moderate drought stress	4.414
SRR1811619	moderate drought stress	4.401

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.340
DRR006520	Root Summer glycyrrhizin high producing strain	5.148
DRR006521	Root Winter glycyrrhizin high producing strain	1.742
DRR006522	Root Winter glycyrrhizin high producing strain	1.740
DRR006523	Root Summer glycyrrhizin low producing strain	5.439
DRR006524	Root Summer glycyrrhizin low producing strain	5.813
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.844
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.194

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.282
SRR2868004	Drought Stress (root)	3.963
SRR2967015	Control (root)	3.943

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.657
SRR9715740	Leaf	2.802
SRR9715741	Leaf	2.739
SRR9715739	Root	1.279
SRR9715742	Root	3.286
SRR9715743	Root	3.004

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.447
SRR8749028	MeJA induced 9h	2.911
SRR8749029	MeJA induced 9h	2.480
SRR8749030	Uninduced	0.034
SRR8749031	Uninduced	0.293
SRR8749032	Uninduced	0.268

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.314
SRR8400027	Control - Root	4.732