Gene detail information of Glyur000217s00014864 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63220.1 | 7.00E-129 | |
| NR | XP_003556214.1 | 0 | PREDICTED: Golgi to ER traffic protein 4 homolog isoform X1 [Glycine max] |
| trEMBL | tr|I1NHC9|I1NHC9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G31760.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00217 | 211663 | 218322 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000217s00014864.1 | PF04190.8 | DUF410 | 46 | 317 | 8.10E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.659 |
| SRR1783600 | control | 7.586 |
| SRR1783602 | moderate drought stress | 5.223 |
| SRR1811619 | moderate drought stress | 5.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.366 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.205 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 29.820 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.213 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.838 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.378 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.535 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 42.257 |
| SRR2868004 | Drought Stress (root) | 34.667 |
| SRR2967015 | Control (root) | 28.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.554 |
| SRR9715740 | Leaf | 25.975 |
| SRR9715741 | Leaf | 26.976 |
| SRR9715739 | Root | 5.739 |
| SRR9715742 | Root | 13.270 |
| SRR9715743 | Root | 11.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.988 |
| SRR8749028 | MeJA induced 9h | 20.750 |
| SRR8749029 | MeJA induced 9h | 20.860 |
| SRR8749030 | Uninduced | 13.997 |
| SRR8749031 | Uninduced | 12.491 |
| SRR8749032 | Uninduced | 9.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.954 |
| SRR8400027 | Control - Root | 33.652 |