Gene detail

Gene detail information of Glyur000217s00014859

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G09510.1	cytosolic invertase 2
NR	XP_004496345.1	PREDICTED: uncharacterized protein LOC101512400 [Cicer arietinum]
COG	YP_007129106.1	neutral invertase [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q67XD9\|CINV2_ARATH	Alkaline/neutral invertase CINV2 {ECO:0000305}
trEMBL	tr\|Q684K1\|Q684K1_LOTJA	Putative neutral/alkaline invertase {ECO:0000313\|EMBL:CAG30577.1}

Sequence

Transcript Sequence

>Glyur000217s00014859.1
TCCCCATAAAGAAATATAAATACACATGCTACTAGCTACAGCCCTCGCTCCCATATCCCAACCAAACCAAATTTGAATATCACAGGAAGGAAGTGCGAGAGACCAGGCGAAACGGTGTCGTGTTGCCTACGTGGACCGTGACCCCCGCCAGCCGCAACCGGCTATACCCTGTAACCCTCTCACACGGAATCGAGTTGTTAGAGAATAAAAAAATATAAAAAAGAAAAGAAGAAATGGGTGGGACGGGTTGTACCCTCTCTCGCAAGGACTCGCTTTCTACCGTTCGTCTTCAGCTATAAATACCAGCTTTCGAGTTCGTGTTCACTTTTTCTCGTCTCCTTACTCTCTTCTCCGCCATTCTCTTCTCCCATCATTTTCCGGCGATATCGCCGGCAAACCACCGTCGTTTCCGCCGGACGATCTCCTTCCTCGTCGCCGTCGCCGTCTTCCTTCAGTGGAGAAAATGGACGGGACAATGGGAATTAGGAAAATCAGCTCTCACTGCTCTATCTCTGAGATGGATGATTTTGATCTCTCTCGTCTGCTTGACAAGCCAAGGTTAAACATTGAGAGACAGAGATCATTTGATGAGAGGTCACTTAGTGAACTGTCGATTGGTTTTGCGAGGGCGGGCTTGGATAACTATGACAATTACTCGCCTGGTGGAAGATCTGGTTTTAACACACCTGCTTCATCTGCTCGGAACTCGTTTGAGCCTCACCCCATGGTTGCTGACGCCTGGGAATCCCTCCGAAAATCTCTAGTCCATTTCAAGGGCCAACCGGTCGGAACAATTGCAGCTGTTGATCATCAAGCAGAGGAGGTTCTAAATTATGATCAGGTTTTTGTTCGAGATTTTGTGCCAAGTGCTCTAGCCTTTTTGATGAATGGTGAACCGGATATAGTTAAGAACTTCTTATTGAAGACACTGCATCTTCAGGGGTGGGAAAAAAGAGTAGATCGATTTAAACTTGGTGAAGGTGTGATGCCAGCTAGTTTCAAAGTTCTCCATGATCCTGTTAGGAAAACAGATACTCTTATTGCAGATTTTGGCGAAAGTGCAATTGGAAGAGTTGCTCCTGTTGACTCTGGATTCTGGTGGATCATTTTGCTTCGTGCGTACACAAAATCTACAGGAGATTTAACTTTGGCTGAATCTTCAGATTGTCAAAAGGGAATGAAGCTTATATTGACTCTATGCTTGTCAGAGGGGTTTGATACATTCCCAACTCTGCTTTGTGCTGATGGATGCAGCATGATTGATCGAAGAATGGGTATTTATGGCTATCCCATAGAGATTCAAGCACTTTTCTTCATGGCGTTGAGATGCGCTTTGTCAATGCTGAAGCAGGATGATTCGGAAGGAAAGGAATGTGTAGAGCGGATTGTGAAGCGTTTGCATGCACTAAGTTATCACATGAGAAGTTACTTTTGGCTTGACTTCCAGCAACTAAATGACATTTATCGGTACAAGACCGAGGAGTACTCACATACTGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATTCCAGAGTGGGTATTTGACTTTATGCCAATACGTGGTGGCTACTTCATTGGAAATGTCAGTCCTGCCCGAATGGATTTTCGATGGTTTGCTTTAGGCAATTGTGTTGCAATTCTATCTTCTCTATCCACTCCAGAGCAGTCAATGGCTATCATGGATCTTATTGAAGCTCGTTGGGATGAGTTAGTTGGAGAAATGCCAATAAAAATTGCTTATCCTGCAATAGAAAGTCATGAGTGGCGAATTGTTACTGGTTGTGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGTGCTCCTGTGGCTATTAACAGCTGCTTGCATCAAGACGGGGCGACCGCAAATAGCAAGACGTGCAATTGAGCTTGCGGAGAGTCGTTTACTGAAGGATGGGTGGCCTGAATATTATGATGGTAAACTTGGGAGATATGTTGGCAAACAGGCAAGAAAATACCAAACATGGTCTATTGCTGGTTACCTGGTGGCCAAGATGATGCTGGAGGACCCCTCACACTTGGGGATGATTTCCCTTGAGGAAGACAAGCAGATGAAACCAGTGATTAAAAGATCATCTTCTTGGACTTGCTAAAAATTTCTGATAGATAAATAGTACAAAAAAAAAAAGAAAGAGAATAGAGAAAAACTTAGAAGGTAAGAGATATTGTTGTTTCAATACACGGCAGTATTCTTTGTGATTCCTTTCCTCTTAGGCCTGATTGGAAGTTTGGCTTGTGTAAAATAGCTGCTGCTGAGACTGGCATCATGCTTTTCCCAAATAATTTTAAGACACTTCAATTCATGTTTGATAAGTTCCATGCTACTGTCCCTCTTGTTTCCGGGGATTATTAGTTACATCAGAAAAAGTATGATTCTTCATTAAATTAAAGTGTTTCCTGACAATTATCAGTAAAGCTTCTTTTAAAAAGGTCTGAGAACCGAAAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00217	189259	194916	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH100

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000217s00014859.1	PF12899.2	Glyco_hydro_100	91	529	1.60E-220

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.622
SRR1783600	control	13.625
SRR1783602	moderate drought stress	10.165
SRR1811619	moderate drought stress	10.021

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.160
DRR006520	Root Summer glycyrrhizin high producing strain	17.913
DRR006521	Root Winter glycyrrhizin high producing strain	26.424
DRR006522	Root Winter glycyrrhizin high producing strain	25.659
DRR006523	Root Summer glycyrrhizin low producing strain	23.615
DRR006524	Root Summer glycyrrhizin low producing strain	23.313
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.402
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.210

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.419
SRR2868004	Drought Stress (root)	66.070
SRR2967015	Control (root)	57.757

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.369
SRR9715740	Leaf	22.681
SRR9715741	Leaf	49.268
SRR9715739	Root	10.404
SRR9715742	Root	34.835
SRR9715743	Root	33.064

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	55.974
SRR8749028	MeJA induced 9h	36.407
SRR8749029	MeJA induced 9h	64.657
SRR8749030	Uninduced	37.920
SRR8749031	Uninduced	67.452
SRR8749032	Uninduced	52.089

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.876
SRR8400027	Control - Root	36.879