Gene detail

Gene detail information of Glyur000217s00014856.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54220.1	1.00E-47	GRAS family transcription factor
NR	XP_007143661.1	0	hypothetical protein PHAVU_007G090700g [Phaseolus vulgaris]
Swissprot	tr\|Q2RB59\|SCR1_ORYSJ	4.00E-54	Protein SCARECROW 1
trEMBL	tr\|V7BDN6\|V7BDN6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW15655.1}

Sequence

Transcript Sequence

>Glyur000217s00014856.1
ATGGAAGATTCAGAGGAAGATGAGCTTCTGAATCTTAGCCTTTCAGTTGCTGCCAATAGAGAAAGGAAAAAGAAGGGAAAGATCATCACTAGCAATGTTTCCATGATGAGTAACATTAATAACTCATCCTCCTATGATATTCAAGAAGGGTATGAAGGGAAGATCTTTAGGCTTCTTCAAATGAGGGAGCAGATGCTAAGACAAGACCATCACCACCACCACCACCAACACATGATGAGATCAAAAAAAGAACAAGAACAAGATCATCATGGGAATGGCCTTCCCTTGATCCACTTGCTCCTAACAACAGCAACAGCAGTTGATGAAAAGAACTATGACTCATCTCTGGAGAATCTCACAGATCTATACCAAACAGTTTCCCTAACAGGTGACTCAGTCCAACGTGTGGTTGCTTATTTTGCAGATGGTTTAGCAGCAAAACTCCTAACAAAGAAATCACCGTTCTATGACATGGTGATGGAGGAACCAACAAGTGATGAAGAGTTCCTTGCATTCACTGATCTCTACAGAGTCTCACCTTACTACCAATTTGCACACTTCACAGCAAACCAAGCCATCTTAGAAGCCTTTGAGAGAGAAGAAGAGAGAAACAACAAAGCCATTCATGTCATTGACTTTGATGTCTCCTATGGTTTCCAATGGCCTTCACTAATCCAATCCCTTTCAGAGAAAGCAACAAGTGGGAACAGAATCTCCCTCAGGATAACAGGGTTTGGTAAGAATCTCAAAGAGCTTCAAGAAACCGAGTCAAGACTAATTAGCTTCTCAAAGGGTTTCACCAACCTTGTGTTTGAGTTCCAAGGGCTTTTAAGAGGTTCAAGGGTGATTAACCTTAGGAAGAAGAAGAATGAGACTGTTGCTGTTAACTTGGTTTCTTATTTAAACACATTGAGTTGTTTCATGAAGATTTCTGACACATTGGGTTTTGTTCATTCTCTTAACCCTTCCATTGTTGTGCTTGTGGAACAAGAAGGTAGTAGGAGTCCAAGGACTTTTCTTTCGAGGTTCACAGATTCTTTGCATTACTTTGCAGCTATGTTTGATTCACTTGATGATGGGTTACCACTTGATAGCACTGAGAGGTTGAGGATTGAGAAGAAGCTACTTGGGAAGGAGATAAAGAACATGCTCAACTATGATGGTGGTGGTGATGGTGTGGAATATTGTGGAAGCAGGTATGAGAGGATGGAGACATGGAAGGCAAGGATGGAGAATCATGGGTTTGTTGGGGAAAAGATGAGTTCAAAGTGTGTGATACAAGCGAAGCTGTTGTTGAAGATGAGGACACATTGTTGTACTCCTCTACTTCAGTTTGAGGAAGATGGGGTTGGTGTTGGTGGTGGTGGTTTCAGGGTTTCTGAGAGAGATGAAGGGAGAGCTATCTCTTTGGGGTGGCAAAATAGGTTTCTTCTTACTGTGTCGGCATGGCAACCACTACTCTCCTCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00217	150976	152445	-

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000217s00014856.1	PF03514.9	GRAS	96	484	5.50E-89

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.050
SRR1783600	control	0.074
SRR1783602	moderate drought stress	0.077
SRR1811619	moderate drought stress	0.077

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.265
DRR006520	Root Summer glycyrrhizin high producing strain	0.219
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.419
DRR006524	Root Summer glycyrrhizin low producing strain	0.376
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.063

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.649
SRR2868004	Drought Stress (root)	0.291
SRR2967015	Control (root)	0.407

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.136
SRR9715740	Leaf	0.042
SRR9715741	Leaf	0.044
SRR9715739	Root	0.093
SRR9715742	Root	0.399
SRR9715743	Root	0.375

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.196
SRR8400027	Control - Root	0.585