Gene detail

Gene detail information of Glyur000217s00014852

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G22700.2	1.00E-82	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004496357.1	0	PREDICTED: uncharacterized protein LOC101515757 [Cicer arietinum]
COG	NP_683196.1	2.00E-29	photosystem I assembly related protein [Thermosynechococcus elongatus BP-1]
Swissprot	tr\|P48277\|YCF37_CYAPA	1.00E-13	Uncharacterized protein ycf37
trEMBL	tr\|A0A072VQ51\|A0A072VQ51_MEDTR	2.00E-178	TPR protein {ECO:0000313\|EMBL:KEH43543.1}

Sequence

Transcript Sequence

>Glyur000217s00014852.1
CCACACTAAAATAAAGATAAAGATGATGAATATTTATTTTACCTGTCAGAGATGGCACCCCTTGTCGGATAACCTGTGTTACCAAAATAGGAACAGCCGAAGAGGCANAAGAGAAGAGAAGATGGGTGCTTCCACTTTCACTCACTTCCTCGTTCTCCCTTACTNTTCTTCTTCTCTTCCCACTCTCTCCCCATCCAAATTTTCTACCAAATCCATCTACGAATCCCTTCCCTCTACCCTTATCTGCAACCAATTCTCTTGCAAACTTGCTACCGCTCCTCATGGCTCTGTAAAAAAGATTAAAGCCTTGGGGATTCAGCAAACAGGATCCACTTCACATGGAGACAACCTTGATGCAATCAAGAGTAGGATTGTGCTCCAGATGTTTCAAAGGGCAATGCCAATGGAACCCCTTAAAACCCTTATCACAAAACAATCCGAGATTAATGACTTTACAACCGAGGATTTTGAAGATGGGAGAAGGTCATCNAAATGGGTTTCAGCATTCTTGTTTGGACAAACTATATCAGTGATTTCTCCTGATGTTTCCTATGCAAGCGACACAGTGAAGATAAATGAGATTTATGAGGTTGGAGAACTGTTTGACTTAGGAATCCAACTAGTATACTTGCTGTTGTTATTGGGTTTGCTCGGGGTTGGGACTTACTTTGTGCTTCGCCAAGTTCTCGTCCGCAGAGAACTTGACCTTTCTGCCAAAGAGTTGCAGGAGCAAGTCAGAAGTGGTGATGCAACTGCAACCGAGCTTTTTGAACTCGGTGCAGTGATGCTGCGGAGGAAATTTTACCCAGCTGCTACCAAGTTCTTGCTTCAAGCAATTGAGAAATGGGATGGAGAAGATCAGGATCTTGCCCAGGTTTACAACGCTCTCGGTGTCAGCTATGTCCGCGACGGGAAGGTTGACAAAGGAATTGCTCAGTTTGAGACAGCTGTGAAGCTTCAACCAGGCTATGTCACAGCATGGAACAATCTTGGTGATGCCCTTGAGAGTCAAAAAGAATACGAGACTGCTCTCAAGGCATTCGAAGAAGTCCTTCTATTCGATCCTAACAACAAGATTGCACGGCCTAGGAGAGATGCTTTGAAGGAACTTGTTGGAATGTACAGAAAAGGAGTTACTGTCAAATATAGAGAGAAGAAATGATTGCCATTAATTGTATCATCAACTCATAACTACAAATATGGCAGACTTAAAGTTTTCAATAACTTGGTTGTGTTTGAAGGAATTTTGGCTCTATTAATGTAATTGAGGTAGTTTTTTTNCCCCTTCTTATTTTGGTACAATGATGATAACAAGGTGTAAAATCAATTAACTCATGCAAATTACTTGAACCCCATCTTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00217	130393	134899	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000217s00014852.1	PF13414.1	TPR_11	282	348	2.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.195
SRR1783600	control	31.246
SRR1783602	moderate drought stress	39.501
SRR1811619	moderate drought stress	38.752

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.442
DRR006520	Root Summer glycyrrhizin high producing strain	38.073
DRR006521	Root Winter glycyrrhizin high producing strain	26.238
DRR006522	Root Winter glycyrrhizin high producing strain	25.586
DRR006523	Root Summer glycyrrhizin low producing strain	44.487
DRR006524	Root Summer glycyrrhizin low producing strain	44.315
DRR006525	Leaf Summer glycyrrhizin high producing strain	44.873
DRR006526	Leaf Summer glycyrrhizin high producing strain	44.035

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.704
SRR2868004	Drought Stress (root)	28.672
SRR2967015	Control (root)	35.542

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.377
SRR9715740	Leaf	66.845
SRR9715741	Leaf	48.367
SRR9715739	Root	12.385
SRR9715742	Root	17.454
SRR9715743	Root	16.388

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.520
SRR8749028	MeJA induced 9h	7.315
SRR8749029	MeJA induced 9h	6.789
SRR8749030	Uninduced	15.715
SRR8749031	Uninduced	7.730
SRR8749032	Uninduced	10.737

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.033
SRR8400027	Control - Root	34.797