Gene detail

Gene detail information of Glyur000217s00014851.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34430.1	3.00E-170	2-oxoacid dehydrogenases acyltransferase family protein
NR	KEH43544.1	0	2-oxoacid dehydrogenase acyltransferase family protein [Medicago truncatula]
COG	YP_007122333.1	1.00E-169	pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [Microcoleus sp. PCC 7113]
Swissprot	tr\|Q9C8P0\|ODP25_ARATH	0	Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic (Precursor)
trEMBL	tr\|A0A072VNF5\|A0A072VNF5_MEDTR	0	2-oxoacid dehydrogenase acyltransferase family protein {ECO:0000313\|EMBL:KEH43544.1}

Sequence

Transcript Sequence

>Glyur000217s00014851.1
CCGGAGGAAAACCAACCAACAAAAAAACACTCTTTAGTTAACAAAAAAAACGGGACGTTAGATTCAGCGGTACATTGGTTGAAAACTCCGCCTTGTTTCGATGAACTCGAGGAAAGCCACTTTGTAGTTAGTAGTTAACCAACAAACACATTACACACAACACACAAACACATTACACACTACACACACTATTATCGCTATTCTTCTTCAATCAATCAATCAATCAATTGAAGTGGAATGGCTCACCTTCTCCAAAGTCCCTTCCTCCCTTCCTCCTCCGTCCTCCGCCGCAGCATTCCCATTCCACTCCACCGGAGGCTAACAACGACGCCCTCCCTCGTGGTTCGGGCGAAGATCCGGGAGATATTCATGCCGGCGCTCAGCTCCACCATGACGGAGGGCAAAATCGTCTCATGGATCAAGTCCGAAGGCGACAAGCTCTCCAAGGGCGACAGCGTCGTCGTCGTCGAATCCGACAAAGCCGACATGGACGTCGAAACCTTCTACGANGGCTACCTCGCCGCCATCCTCGTCGACGAGGGCAACGTCGCCGCCGTCGGATCCCCCATCGCATTCCTCGCCGAATCCGAAGACGAAATCGACCAGGCCAGGTCCAAAGCCCTCTCTTCTTCCCCCTCTCCCTCACCTTCACCAGCACCTGCTGCTCCTGTGGCAGCAGCAGCAGCACCTGTAGAATCTCAACCGAAGAAGGTTGCGGTTGCGGAGGATGTTCCGGCGGCGGTTGCGTCGAGGCATCCGGCGTCGGAGGGAGGGAAGAGGGTGGTGGCGTCGCCTTACGCGAAGAAGCTGGCGAAGGAGTTGAAGGTGGAGTTGGGCAAAATCGTGGGGACTGGACCCATGGGGAGGATTGTGGCCAAAGACGTTGAGGCATTTGCAGCTTCCGGGAGTGTTACTGCGGCAGCGCCCGCGGCGACGGCTGCGGCGGCTTCCGGGGTGGAGTTGGGGAGTGTGGTGCCCTTCACCACAATGCAAGGTGCTGTGAGTAGGAACATGGTGGACAGCTTGACGGTTCCCACTTTCNGAGTTGGTTACACCATCACCACCGATGCACTTGATGCTCTCTATAAGAAGATCAAGTCAAAGGGAGTTACTATGACAGCATTGCTTGCCAAGGCTACAGCACTTGCGCTGGTTAAACACCCTGTTATAAACTCTAGTTGTAGAGATGGTAATAGCTTTACATATAATAGCAGCATCAACATTGCAGTTGCTGTGGCTATAGATGGTGGACTGATTACACCAGTGCTTCAGGATGCTGATAAGGTCGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTCGATAAGGCCCGAGCCAAGCAGCTGCAACCTCATGAATACAACACAGGTACTTTCACCCTTTCCAACCTGGGAATGTTTGGTGTTGATCGCTTTGATGCCATTCTGCCACCTGGAACTGGAGCAATAATGGCTGTTGGAACATCACAGCCAACTGTTGTGGCTACCAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGGTCAATGTTACGGCAGATCATCGAGTAATCTATGGTGCTGATCTGGCTTCATTCTTGCAAACCCTGTCNCAGATTATTGAGGACCCTAAAGATCTTACTTTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00217	125970	129072	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00627	DLAT, aceF, pdhC	EC:2.3.1.12	Carbon metabolism	map01200
			Glycolysis / Gluconeogenesis	map00010
			Citrate cycle (TCA cycle)	map00020
			Pyruvate metabolism	map00620

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016746 transferase activity, transferring acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000217s00014851.1	PF00364.17	Biotin_lipoyl	42	112	2.60E-17
Glyur000217s00014851.1	PF02817.12	E3_binding	181	218	1.40E-13
Glyur000217s00014851.1	PF00198.18	2-oxoacid_dh	245	462	8.50E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.040
SRR1783600	control	19.122
SRR1783602	moderate drought stress	14.486
SRR1811619	moderate drought stress	14.164

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.383
DRR006520	Root Summer glycyrrhizin high producing strain	19.343
DRR006521	Root Winter glycyrrhizin high producing strain	6.524
DRR006522	Root Winter glycyrrhizin high producing strain	6.157
DRR006523	Root Summer glycyrrhizin low producing strain	15.860
DRR006524	Root Summer glycyrrhizin low producing strain	16.271
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.078
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.283

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.349
SRR2868004	Drought Stress (root)	27.287
SRR2967015	Control (root)	28.244

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.624
SRR9715740	Leaf	16.176
SRR9715741	Leaf	18.789
SRR9715739	Root	33.105
SRR9715742	Root	19.975
SRR9715743	Root	22.021

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.207
SRR8749028	MeJA induced 9h	9.540
SRR8749029	MeJA induced 9h	7.600
SRR8749030	Uninduced	3.277
SRR8749031	Uninduced	1.827
SRR8749032	Uninduced	2.558

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	57.826
SRR8400027	Control - Root	64.122