Gene detail

Gene detail information of Glyur000217s00014848.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54160.1	7.00E-76	O-methyltransferase 1
NR	BAA13683.1	0	O-methyltransferase [Glycyrrhiza echinata]
COG	YP_001869557.1	2.00E-33	O-methyltransferase family protein [Nostoc punctiforme PCC 73102]
Swissprot	tr\|P93324\|CHOMT_MEDSA	0	Isoliquiritigenin 2'-O-methyltransferase
trEMBL	tr\|Q96424\|Q96424_GLYEC	0	O-methyltransferase {ECO:0000313\|EMBL:BAA13683.1}

Sequence

Transcript Sequence

>Glyur000217s00014848.2
ATGGGGGATTCATATTCCACTAAGGATAACAACCTCTTTAGCACTTCCTCTGAACAAACAGAGGATGGTGCTTGCCTCTCTGCAATGCGGCTTGTCACGAATCTGGTGTACCCAGCAGTTCTCAATGCTGCCATTGATCTCAACTTGTTTGAGATCATAGCAAAGGCAACCCCACCTGGTGCATTCATGTCAGCATCAGAAATTGCCTCCAAGCTACCATTGCCAACCCAACACTCTGACTTGCCCAATAGGCTTGACCGCATGCTGCGTTTGCTCGCCAGCTATTCCGTTCTCACTTGTGCCACTCGCAGCACANAGAGAGTTTATGGCCTCTCACAGGCTGAACTTCAAGGAAGCAGTGACATTGATCTGTTCAAAAAACTTCATGGAATTCCCAAATACGAGTACATGCAAAAGGATCCGAAAATGAGCCACATTTTTCACAAGTCACTGGCCGACATGTGTGCAATGGAGATGAGAAGAATACTTGAAATATATACCGGATTTGAGGGAATATCAACGTTGGTTGATATGGGAGGTGGAAATGGACAAAATCTCAAAACGATAATATCCAAGTACCCATCAATAAAGGGAATTAATTTTGATCTGCCCCAAGTCACTGAAAACGCACCACCAATTCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACAAGGTGACGCCATAATAATAAAGGCTGTATTTCATAATTGGACAGATGAAAAATGCTTAGAATTTTTAAGCAATTGTCACAAAGCATTGCCACCAAATGGGAAGGTAATTGTTGTGGAGTTTATAATGCCAGAAGAACCGGAACCAACAGAATTATCTCAGCTGCTTTCCACTGTTGACAATCTCATGTTTATCACCGTTGGTGGAAGGGAAAGAACCGAAAAACAGTTTGAGAATCTGTGCAAACTCTCTGGATTTTCTAAATTCCAAGTTGCTTGTCGCGTTTTCCACTGTTTAGGAGTGATGGAATTTTATAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00217	103388	114312	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13066	E2.1.1.68, COMT	EC:2.1.1.68	Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

molecular_function

GO:0008168 methyltransferase activity

GO:0008171 O-methyltransferase activity

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000217s00014848.2	PF08100.6	Dimerisation	40	93	7.40E-19
Glyur000217s00014848.2	PF00891.13	Methyltransf_2	113	309	3.40E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	77.983
SRR1783600	control	76.970
SRR1783602	moderate drought stress	83.571
SRR1811619	moderate drought stress	82.545

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.223
DRR006520	Root Summer glycyrrhizin high producing strain	0.214
DRR006521	Root Winter glycyrrhizin high producing strain	4.825
DRR006522	Root Winter glycyrrhizin high producing strain	4.533
DRR006523	Root Summer glycyrrhizin low producing strain	0.229
DRR006524	Root Summer glycyrrhizin low producing strain	0.286
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.172
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.406

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	184.354
SRR2868004	Drought Stress (root)	171.883
SRR2967015	Control (root)	175.443

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.751
SRR9715740	Leaf	0.494
SRR9715741	Leaf	2.564
SRR9715739	Root	9.862
SRR9715742	Root	13.525
SRR9715743	Root	11.770

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	286.370
SRR8749028	MeJA induced 9h	779.157
SRR8749029	MeJA induced 9h	396.615
SRR8749030	Uninduced	624.271
SRR8749031	Uninduced	741.784
SRR8749032	Uninduced	475.493

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	126.242
SRR8400027	Control - Root	78.692