Gene detail

Gene detail information of Glyur000217s00014847.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34550.1	0	Protein of unknown function (DUF616)
NR	KEH43551.1	0	transmembrane protein [Medicago truncatula]
COG	YP_005066426.1	8.00E-12	hypothetical protein [Arthrospira platensis NIES-39]
trEMBL	tr\|A0A072VPG5\|A0A072VPG5_MEDTR	0	Transmembrane protein {ECO:0000313\|EMBL:KEH43551.1}

Sequence

Transcript Sequence

>Glyur000217s00014847.1
AAATGATGCCTCCCTCCGGTGGTTTTCATTTATTGTGAATTTTGTCGCCTTTTTTTCTAAATTTCATGCGGGTATGTAGATCTAGTAGAACAAATCTCTTTCGGAAACTAAAAATTGATCTTTCTTTAATTAAAACCTAATCATGTGAAATCTTCTAAAACTGGATCAAAACATGGTATCTTCAGGAGAACACAACAAACTAACCCAATAATTATCAAAATTACTACTATCAAATTATTAATGTATAATAATTATAATCATTCTCTCTCAAATCTCAAAGCTAAAAATAAAAACAAAGAGCAAAATCGAAAATTCAGCCCAATCTGTGAATCCCAAACATTAGAAGATCAATACCCTTTTGATGGACCTGTGATTCCCGGGAGAAGAAAAAAAAACACTATCCTCCACCTATATCCCCGGCGGCACTCCATCGGCGGCGACTACTTCTCTCTCTCTCTCTCTCTCTCTCTCATGCTAACTCACTAACTAGCTCATGCTTTGCTTGCTGCTCCTATATATCCATTTATTTTAATTAATAAAAAATTGAGCAGCTGGTTACCCATTTTTTCCACGAACAAAACACATACAAAAAAAAAAAAATCAACCATCGTCTACACTTGTTTCACACTCTTCCTCAACTCCCACCCAACCAAAATCTACACTACCCCATTACACCACAGCGTCAAAGTCTGAATCTTTGTGCAAAACAAGCTCGTGGGTAGGGCGAGCTTGTTAGAGAGAGAAACGGTAGAGAGAGAAACGGTGNGTGTGTGACAGTGTGAGTGTTATGGTATGGCTCAGCAGAGGCAAACGGGAACGGAGAGGTTTGGGGTGAGGGTGGGGACCCACGATCTGCACCTCGCTAACGGCTCCTCCGATCACGTCGCCGTCCGGATTCGCGGCGGCGTCGCTAACAAGCAGCCCCGGCTCCGGCGATCGGNGCGATCCGACAGGGGCGCGCATCTCTCGGTGGCTGCAATCCTAGTTTTCCTCTTCCTCGTACTTGTCGTCACTTTCCTGGTGTTCTCTTACATTTCTAGAGACGAAATAAGTAACAATGGTGATGATACTGATGATTTAAAGAGTGAATCTGATTTTCTTACAAACGTACCACGAATAGAGAGGAAGAAAGTTCTTGACTTTGGGCATGGTTCTGGGGGACATGGCCGAGACTCAAGATATTGGGATAGGGATGATAGGAGGAGGGATGATGATTATGATGAGGACGTGATGGAGCAGAAAAATAAGGATCCTGGAGATGAAAATACTGAAGATGATGCTCCTGTAAAGACNGATCACGATATGAAGTCTTCTCAGGATGGTTCTCATACGGGTTTAAAGCGAAGAGGCGTTGGCTTATATAATGAAGCGGGACGTCATGAATTGAAAAGGTATGAAGCAGAATATGAGGCTTCTTTGAAGAATCTGGGACACTCCACTGAAGATGATGGGGGAATGTCGCATGATGCTGATCTGGAGAAGAAGAATGCAGCAGATGATATTGATGATGAGTATGATGACTTTTTTGATTTTCATGATGCTCAAATGGAAGACTCCGCTGATAGTAGAAATATGGGANGGAAACATTCTAATTCTAATACACTAAGGTCGGACAATGAAGTTCAGAAAGAAAGTCANGATTCTTTTGATGTGGGAACCAATAATGATATTACTTCTGAGGATATTGATGGGTCATCTTCCTTAAACAAAAAAATTTCTCATGATGGAAAAACAAATTCTAGACATGAAAATCTTACAAATGAACAATCAAACAAAAAATCACATCCTGAAACAAAAAGGAAANCCAAGCGTCGGAAATTCTCAGGATCCTGTGAGATGAAGTTGTTAAACTCAACTTCACAGCTTGTAGAACCACTAGAAAGTCGAAAATTCGCAAGATTTAACTTGCACTATGTAGAGACAGAAGAGAAGCCCATGGGAGTAGAACAATGGGTGCCCAGATTTGCAGGCCATCAGAGCTTAGAAGAGAGAGAAAATTCATTTTTGGCACGTGATCAGAAAATAAAATGTGGTTTTGTCAAAGGTCCTGAAGGTTCTTCCAGCACTGGATTTGACTTGTCAGAAGATGATGAAAGCTACATTAGCAGATGCCACATTGCTGTGATTTCATGTATATTTGGAAATTCTGATCGCTTGAGGACCCCGGCCACCAAAACGGTCACTCGTTTGTCAAGGAAGAATGTCTGCTTTGTTATGTTTACTGATGAAGTTACAGTACGAACACTTTCTGCTGAGGGTCATGCGCCTGATAGAATGGGTTTCATTGGCTTTTGGAAGTTGGTGGTAGTGAGGAATTTACCTTATGATGATATGCGGCGTGTGGGCAAAATACCTAAGTTATTGCCACATCGACTTTTTCCCTTTGCAAGGTATTCAATTTGGTTGGACAGCAAATTAAGGCTGCAGCTTGATCCTTTACTCATCTTGGAGTACTTTTTGTGGCGAAAGGGTTATGAATTTGCAATATCCAATCACTATGACCGACGTTGTGTGTGGGAAGAGGTAGCACAAAACAAGAGATTGAACAAGTATAATCACACGGTTATAGATCAACAATTTGCATTTTACCAGGCTGATGGACTGAAAAGATTTAACGCATCGGATCCAAACAAACTTCTTTCAAGCAATGTACCAGAAGGTTCTTTTATTATTCGGGCACACACCCCAATGTCAAATTTGTTCTCCTGTCTTTGGTTCAATGAAGTTGACCGGTTTACTCCTCGTGACCAGCTGAGTTTTGCATATACTTATCAGAAGCTGAGAAGGATGAATCCTGACAAACCTTTTCATCTTAATATGTTCAAGGACTGTGAAAGGAGACATATGGCCAAGTTGTTCCGTCATAGGCTGGATGAGAAGAGAACTCGTCAAAAAGCAACAGAATAAACCAAAGTTTTTATTAACATTTTTATTGCTATAGTGGGCTTGATTTGATGTACATGGCCATTCTCTTCCATTATCTGTTTGAAGTTGTGATCTCTGCTGGCCACATATGCTGCGGAGTTCGTGCCACNGTTCAGTGACTTGATGATTCAGCTGAGGTGTTGTTTCTCAAGGAAGTGAAGAAGTGTTTCTCAAAGTAAANTCTACAGTGATGCTGTGTCATCCATATTTTGTGGTTATATTTTATCATATCTCTTGTATCCATCCATTTGTGACAGATAATTCATTTATGCCTTGGGAGACAAGCAAAGCATAAAAAAATGAACCCCTGACCCTCACTTCCACTACTACAGCACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00217	90382	97894	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000217s00014847.1	PF04765.8	DUF616	371	691	3.00E-131

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.961
SRR1783600	control	15.193
SRR1783602	moderate drought stress	12.089
SRR1811619	moderate drought stress	11.864

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.412
DRR006520	Root Summer glycyrrhizin high producing strain	14.105
DRR006521	Root Winter glycyrrhizin high producing strain	7.991
DRR006522	Root Winter glycyrrhizin high producing strain	7.729
DRR006523	Root Summer glycyrrhizin low producing strain	11.980
DRR006524	Root Summer glycyrrhizin low producing strain	12.049
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.708
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.619

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.067
SRR2868004	Drought Stress (root)	18.949
SRR2967015	Control (root)	20.159

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.954
SRR9715740	Leaf	10.644
SRR9715741	Leaf	15.021
SRR9715739	Root	1.887
SRR9715742	Root	9.179
SRR9715743	Root	7.886

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.297
SRR8749028	MeJA induced 9h	22.870
SRR8749029	MeJA induced 9h	14.267
SRR8749030	Uninduced	8.050
SRR8749031	Uninduced	2.795
SRR8749032	Uninduced	3.413

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.442
SRR8400027	Control - Root	27.684