Gene detail information of Glyur000217s00014845 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G09600.1 | 9.00E-24 | GAST1 protein homolog 3 |
| NR | XP_004496364.1 | 8.74E-52 | PREDICTED: gibberellin-regulated protein 2-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|P46687|GASA3_ARATH | 8.00E-30 | Gibberellin-regulated protein 3 (Precursor) |
| trEMBL | tr|A0A072VZR7|A0A072VZR7_MEDTR | 6.00E-49 | Thionin-like protein {ECO:0000313|EMBL:KEH43555.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00217 | 81480 | 83015 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000217s00014845.1 | PF02704.9 | GASA | 37 | 96 | 3.00E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.320 |
| SRR1783600 | control | 0.182 |
| SRR1783602 | moderate drought stress | 0.190 |
| SRR1811619 | moderate drought stress | 0.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.906 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.815 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.275 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.275 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.115 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.106 |
| SRR2868004 | Drought Stress (root) | 0.123 |
| SRR2967015 | Control (root) | 0.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.083 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.005 |
| SRR9715739 | Root | 1.450 |
| SRR9715742 | Root | 2.979 |
| SRR9715743 | Root | 2.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 38.258 |
| SRR8749028 | MeJA induced 9h | 52.909 |
| SRR8749029 | MeJA induced 9h | 37.105 |
| SRR8749030 | Uninduced | 91.469 |
| SRR8749031 | Uninduced | 57.384 |
| SRR8749032 | Uninduced | 132.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.720 |
| SRR8400027 | Control - Root | 2.829 |