Gene detail information of Glyur000217s00014839 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G35680.1 | 4.00E-17 | Ribosomal protein L21 |
| NR | AFK45427.1 | 1.17E-79 | unknown [Lotus japonicus] |
| COG | YP_004150757.1 | 2.00E-10 | ribosomal protein L21 [Thermovibrio ammonificans HB-1] |
| Swissprot | tr|P51412|RK21_ARATH | 2.00E-30 | 50S ribosomal protein L21, chloroplastic (Precursor) |
| trEMBL | tr|I3SYT5|I3SYT5_LOTJA | 4.00E-80 | Uncharacterized protein {ECO:0000313|EMBL:AFK45427.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00217 | 47482 | 50687 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000217s00014839.1 | PF00829.16 | Ribosomal_L21p | 124 | 159 | 5.70E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 92.716 |
| SRR1783600 | control | 94.417 |
| SRR1783602 | moderate drought stress | 77.829 |
| SRR1811619 | moderate drought stress | 76.632 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 71.002 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 68.333 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 50.202 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 48.726 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 70.745 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 71.061 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 279.991 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 279.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 35.176 |
| SRR2868004 | Drought Stress (root) | 40.877 |
| SRR2967015 | Control (root) | 44.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 207.781 |
| SRR9715740 | Leaf | 238.971 |
| SRR9715741 | Leaf | 154.358 |
| SRR9715739 | Root | 40.688 |
| SRR9715742 | Root | 33.214 |
| SRR9715743 | Root | 37.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 82.103 |
| SRR8749028 | MeJA induced 9h | 77.067 |
| SRR8749029 | MeJA induced 9h | 68.466 |
| SRR8749030 | Uninduced | 56.853 |
| SRR8749031 | Uninduced | 37.307 |
| SRR8749032 | Uninduced | 55.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 71.311 |
| SRR8400027 | Control - Root | 76.836 |