Gene detail

Gene detail information of Glyur000217s00014838.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G09570.1	0	calcium-dependent protein kinase 4
NR	XP_004496370.1	0	PREDICTED: calcium-dependent protein kinase 4-like [Cicer arietinum]
COG	YP_642814.1	3.00E-27	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|Q38869\|CDPK4_ARATH	0	Calcium-dependent protein kinase 4
trEMBL	tr\|A0A072VP17\|A0A072VP17_MEDTR	0	Calmodulin-domain kinase CDPK protein {ECO:0000313\|EMBL:KEH43562.1}

Sequence

Transcript Sequence

>Glyur000217s00014838.1
TTGGAGAGGGAGAGAGAGGGAGAGAGAAAGAAAGAAAAGAGAGGGAGAAAGAAAAGGGAAAAGAAACAATCTTTATCATCTTTAGATCAANCCCATTTCAGGTTTTCACCATCTGAATTTGAGAGGATGCAGAAGCACAATTTTGCATCGAAATCATCATCAAAATGCACTGCGGTGTTGCCGTATCAAACCCCAAGGCTAAGGGATCACTACCTCCTTGGGAAGAAGCTNGGGCAAGGCCAATTTGGGACAACATACCTGTGCACCCACAAGACAACAGGGAAGCTCTATGCCTGCAAATCAATCCCAAAGAGGAAGCTTTTGTGTCAGGAGGACTATGATGACGTGTGGAGGGAGATTCAGATCATGCACCATTTGTCAGAACACCCAAATGTGGTTCAGATACAGGGGACCTATGAGGATTCTGTGTTTGTGCACCTTGTGATGGAGCTGTGTGCTGGGGGTGAGCTTTTTGATAGGATCATTCAGAAGGGGCATTATAGCGAGAGAGAGGCTGCGAAGCTGATCAAGACCATTGTTGGGGTGGTTGAGGCGTGTCACTCCCTTGGTGTCATGCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATACCCCTGGTGAAGATGCCAAGATGAAGGCCACCGATTTTGGTCTCTCTGTCTTCTACAAGCCAGGACAAGCCTTTCATGATGTCGTTGGAAGTCCCTACTATGTTGCCCCTGAGGTGTTGTGTAAGCAATATGGACCAGAAGTGGATGTGTGGAGTGCTGGTGTTATCCTATACATCTTACTGAGTGGGGTCCCACCTTTCTGGGCTGAATCCGAGGCAGGAATTTTCAGGCAGATTTTACATGGAGAGCTTGATTTTGTATCTGAGCCATGGCCAAGTATCTCAGATAGTGCTAAAGATTTGGTAAAGCTGATGTTGGACAGGGACCCTAAGAAAAGAATCTCTGCTCATGAAGTCTTATGTCACCCTTGGATTGTTGATGATAAGGTTGCCCCTGACAAGCCGTTGGATTCTGCTGTTTTGACACGCCTAAAGCATTTCTCAGCNATGAACAAACTTAAGAAGATGGCACTACGTGTCATAGCAGAAAGACTTTCAGAGGAAGAGATAGGCGGGTTGAAAGAGTTATTCAAAATGATTGACTCAGACAACAGTGGGACAATAACTTTTGAGGAACTCAAGGAGGGTTTAAAAAGTGTGGGCTCCAATCTCATGGAATCTGAAATCAAATCTCTTATGGATGCGGCTGATATAGACAACAATGGAACAATAGACTATGGTGAGTTTCTCGCTGCTACACTGCACTTGAATAAGATGGAAAGGGAGGAGAATTTGGTTGCAGCTTTTGCCTATTTTGATAAAGATGGAAGTGGTTANATCACCATTGATGAGCTTCAACAGGCTTGTAAAGACTTTGGCCTAGGTGATGTGCATCTGGATGACATGATCAAAGAGATTGATACAGATAATGATGGGAGAATTGATTATGCTGAGTTTGTAGCAATGATGAAACAGGGTGATGCAGATGTTGTTGGAAGGAGCAGAACCATGAAAGGCAATTTGAACTTCAATATTGCAGATGCATTTGCAATGAAAGACTCTTCTTAATGTGCTAACTGAAAAACCTTTTGTGTACAGTACTTAGGAAGAATGAATGGTAGAAGAAAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00217	42799	46457	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13412	CPK	EC:2.7.11.1	Plant-pathogen interaction	map04626
			Toxoplasmosis	map05145

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005509 calcium ion binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000217s00014838.1	PF00069.20	Pkinase	73	329	6.70E-73
Glyur000217s00014838.1	PF13499.1	EF-hand_7	377	436	1.20E-13
Glyur000217s00014838.1	PF13499.1	EF-hand_7	452	507	2.60E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.137
SRR1783600	control	13.355
SRR1783602	moderate drought stress	15.806
SRR1811619	moderate drought stress	15.766

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.721
DRR006520	Root Summer glycyrrhizin high producing strain	27.664
DRR006521	Root Winter glycyrrhizin high producing strain	28.253
DRR006522	Root Winter glycyrrhizin high producing strain	27.284
DRR006523	Root Summer glycyrrhizin low producing strain	39.100
DRR006524	Root Summer glycyrrhizin low producing strain	38.861
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.152
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.097

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.354
SRR2868004	Drought Stress (root)	54.606
SRR2967015	Control (root)	55.304

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.125
SRR9715740	Leaf	27.778
SRR9715741	Leaf	22.311
SRR9715739	Root	2.422
SRR9715742	Root	20.406
SRR9715743	Root	16.365

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.793
SRR8749028	MeJA induced 9h	8.815
SRR8749029	MeJA induced 9h	5.284
SRR8749030	Uninduced	5.085
SRR8749031	Uninduced	4.652
SRR8749032	Uninduced	5.189

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.234
SRR8400027	Control - Root	32.772