Gene detail

Gene detail information of Glyur000217s00014833

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71960.1	1.00E-112	ATP-binding casette family G25
NR	KEH43567.1	0	white-brown-complex ABC transporter family protein [Medicago truncatula]
COG	YP_006435207.1	2.00E-35	multidrug ABC transporter ATPase [Flexibacter litoralis DSM 6794]
Swissprot	tr\|Q84TH5\|AB25G_ARATH	8.00E-141	ABC transporter G family member 25
trEMBL	tr\|A0A072VP21\|A0A072VP21_MEDTR	0	White-brown-complex ABC transporter family protein {ECO:0000313\|EMBL:KEH43567.1}

Sequence

Transcript Sequence

>Glyur000217s00014833.1
GTCCTGATCCCTCCATAAATACCCCATTGTATTCCTATCCCTTGTTCCTCTCACTTCATTACATTCACTACTCTCACACACACTTCCCCTCNATCTACTTCTCTTTTTCTCTTTTGCCACCCCCCCCCTCCCCTCTCATCATCATTATCATCATCATAATTTCTTCCCTCTTTTCCAAGTTTCCAAAGCTCGATTTCTTCTCTTTTTGTCCCCTAATAACTTGAGAGTGAGAGAGAGAAACAAACAAACAAAGGAAGTAAGAAAAGTAATAATGCCAACACCAACGGCAACAGCAGCGTTTGGTGGTGTAGAAACTCCAAATGGAGACTCATCCAACACTCATGCCCCTCCCAAACACGGCCCCCGAGAATCGCGTGACCATCCTCCTTTACTGTCTTCTTCTTACCCCATCACTCTTAAGTTCATGGACGTGGGATACCGATTGAAGATAGAGAACAAAAAAGGGAAAGGAGGGTGCATCAAGGAATTGTTTGCGACGCACGAATCATCACCGTCTGATCAGAGATCAACGGTGGGAGAGCGAACCATCCTGAACGGGGTAACGGGGATAGCGTACCCAGGGGAGATCCTAGCGATCCTGGGCCCNTCGGGGAGCGGGAAATCGACGCTCCTTAACGCGCTCGCAGGGAGGCTCCATGGAAACGGCCTCACCGGAACAATCCTCGCCAACTCATCGAAACTCAACAAACCGATCCTCCGGCGAACCGGGTTCGTTGCACAGGACGACATCCTCTACCCTCACCTAACGGTGAGAGAGACCCTGGTGTTCTGCTCCATGCTGCGCCTCCCGAGGACGCTGCCGCGCNCGGCGAAGGTGGCGGCGGCGGAGTCGGCGATCGCGGAGCTAGGGCTGAGGAAGTGCGAGGACACGATCATCGGGAACAGCTTCATCCGCGGNGTGTCCGGCGGGGAGAGGAAGCGNGTGAGCATAGCGCACGAGATGCTGGTGGACCCGGCGCTCCTGATCCTGGACGAGCCTACCTCCGGGCTGGACTCCACGGCGGCGCACCGCCTGGTGGGGACGCTGGGGTCGCTGGCGAAGAAGGGGAAGACGGTGGTGACGTCGGTGCACCAGCCGTCGAGCCGCGTCTACCAGATGTTCGACAGGGTGCTGGTGTTGTCGGAAGGCTACTGCTTGTACTACGGCAAAGGAACCGACGCCATGCGATACTTCGAGTCGGTTGGGTTCGCGCCATCCTTTCCGGTTAATCCGGCGGATTTTCTGCTCGATCTCGCCAACGAGAATATTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00217	2992	5815	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000217s00014833.1	PF00005.22	ABC_tran	95	245	3.80E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.553
SRR1783600	control	10.662
SRR1783602	moderate drought stress	4.599
SRR1811619	moderate drought stress	4.718

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.478
DRR006520	Root Summer glycyrrhizin high producing strain	13.947
DRR006521	Root Winter glycyrrhizin high producing strain	3.006
DRR006522	Root Winter glycyrrhizin high producing strain	2.944
DRR006523	Root Summer glycyrrhizin low producing strain	8.717
DRR006524	Root Summer glycyrrhizin low producing strain	9.237
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.900
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.968

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.001
SRR2868004	Drought Stress (root)	38.590
SRR2967015	Control (root)	31.352

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.400
SRR9715740	Leaf	0.941
SRR9715741	Leaf	2.378
SRR9715739	Root	8.228
SRR9715742	Root	14.493
SRR9715743	Root	16.312

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.548
SRR8749028	MeJA induced 9h	6.623
SRR8749029	MeJA induced 9h	0.881
SRR8749030	Uninduced	1.384
SRR8749031	Uninduced	0.060
SRR8749032	Uninduced	0.972

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.382
SRR8400027	Control - Root	25.343