Gene detail

Gene detail information of Glyur000216s00014164.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12470.1	2.00E-131	Protein of unknown function (DUF3411)
NR	XP_004505639.1	0	PREDICTED: uncharacterized protein LOC101503763 [Cicer arietinum]
trEMBL	tr\|G7JRM8\|G7JRM8_MEDTR	0	DUF3411 domain protein {ECO:0000313\|EMBL:AES89561.1}

Sequence

Transcript Sequence

>Glyur000216s00014164.1
CNCAAGCAAGTCCCGCCCCAGGTTATAATAATAAACTTAGAACTCCAAAAGCAGGGAAGTGAAAGGGAAGTGAAGAAAGAAAGATACAACAATGTCGTCGATCGCTTTCTCCTTCATTCCTCCCATTTCCTCTTCTTCTCATTCTCCTTCTTCTTATTCCTCTTCTAAATCCATCCCTTCATTTTCCTTCCCCTCACTCTCCCTCCGTCTCCGCCTCTCCCCTACTCCCTCTCCATTGTGCCGCATCCAGCAGCGCCGCACAGATCTCCCCTTCATTCTCCACTCCTCCACCGGCGGCGGCGACGGCGGAGTAGGAGGAGGATCATTTGGCGGTCACGGCGGAGACAACGGAGACGGAGGCAATGACGGCGGCAATATCGGGAAGGAGGTGCTGCTGGTGCTGGCGGAAGCAGGGAGGTCGTTAGAGAGCTTGCCGGCTGACTTGGCGGCGGCGATCAGGGAAGGTAAGATCCCGGCGTCAGTGGTGGCGCGTTTTCTGGAGCTTGAGAAGTCTCTAATCTTCCGGTGGTTGCTTCAGTTCTCCGGCTTCAAGGAACGTCTCCTCGCCGATGATCTCTTCCTCGCTAAGGTTGCCTTTGAGTGTGGCGTTGGCGTCTTCACCAAGACTGCTGCTGAGTATGACCGAAGGAGAGAGAACTTTTTCAACGAGCTCGAAATTGTGTTCGCCGATGTGGTCATGGCCATAATTGCAGATTTCATGCTGGTTTATCTTCCTGCACCTACTGTTTCTCTTAGACCAGCACTTGGAGTCAATGCAGGGTCTCTTGCTAAATTTTTCCACAACTGCCCAGATAATGCATTTCAGGTTGCTCTCTCTGGAACATCATATTCCTTATTACAGAGGATAGGTGCAATTGTGCGTAATGGGACTAAGCTTTTTGNGGTTGGAACTGCTTCATCACTGGTTGGGACAGCTGTGACAAATGCCTTAATTAATGCAAAGAAGGCTGTTAATAAGTCCTCTGCTGGGGAAATTGAAAATGTTCCCATATTCTCTACCAGTGCTGCCTANGGTGTCTATATGGCAGTTTCTAGCAACCTCAGGTATCAAGTCCTTGCTGGAATTATTGAACAGAGACTTTTGGAACCTTTGCTACACCAGCACAAGCTTATGCTTAGTGCAATTTGCTTTGCTGTTCGGACCGGCAATACGTATTTGGGNTCATTATTATGGGTGGATTATGCTCGTTGGGTAGGAGTTCAGTAGGCTCAAGACAAAGATCATGACTTTGGATCTTTCTTGATTGACTGCATTTTTCTCAAGGTGTTCATTTGCTTCATTATTGTGACATCACAAAACAATTTAACTTCTTCGGAGGTTTTATCATAGGATTAGCCCAATAGGTTTTTCATCCCTTCTATTTAATTTTATATGCTCATTGCTGAGCACTCTGCGTATTCTTGTTTTTCTCACAACTTTCCTCATTCAATTGATGTTANGAGGATGAGAACACAGTTTTTTTCCTCCTTAGTTTGAAACTCGATAAAAGGGTTGCAGCAGATTAAAAGATGTTAAAGAAACACTACTCGCACCATTTTTTTTCTTCTCTCTCTCTCTTTCTCTAGCATAAGCTACGGGCTGTTTATTATTTCACAAATTTGGCCTGTATATTGACAAATTCCTCCTTGATTTGCTAGAACTGTAGNATTTGTTTTCAGAGCTTTAATTAGAATAATGCCTGCTTGAGGAGGTTTGTTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00216	230797	235076	+

Gene family

Gene family	subfamily
EAR motif-containing Proteins	other

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000216s00014164.1	PF11891.3	DUF3411	155	332	1.80E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.390
SRR1783600	control	17.554
SRR1783602	moderate drought stress	10.508
SRR1811619	moderate drought stress	10.384

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.136
DRR006520	Root Summer glycyrrhizin high producing strain	11.181
DRR006521	Root Winter glycyrrhizin high producing strain	7.770
DRR006522	Root Winter glycyrrhizin high producing strain	7.702
DRR006523	Root Summer glycyrrhizin low producing strain	10.995
DRR006524	Root Summer glycyrrhizin low producing strain	11.014
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.783
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.827

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	75.562
SRR2868004	Drought Stress (root)	34.015
SRR2967015	Control (root)	36.093

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.015
SRR9715740	Leaf	4.027
SRR9715741	Leaf	5.448
SRR9715739	Root	14.279
SRR9715742	Root	15.810
SRR9715743	Root	15.273

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.320
SRR8749028	MeJA induced 9h	31.380
SRR8749029	MeJA induced 9h	26.296
SRR8749030	Uninduced	11.385
SRR8749031	Uninduced	3.137
SRR8749032	Uninduced	8.093

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.448
SRR8400027	Control - Root	54.116