Gene detail

Gene detail information of Glyur000216s00014162

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G51440.1	3.00E-173	alpha/beta-Hydrolases superfamily protein
NR	XP_004505625.1	0	PREDICTED: phospholipase A1-Igamma3, chloroplastic-like [Cicer arietinum]
COG	YP_008088318.1	1.00E-12	Predicted lipase [Chthonomonas calidirosea T49]
Swissprot	tr\|Q9C8J6\|PLA17_ARATH	0	Phospholipase A1-Igamma3, chloroplastic (Precursor)
trEMBL	tr\|I1LIJ8\|I1LIJ8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G09910.1}

Sequence

Transcript Sequence

>Glyur000216s00014162.1
ATGGCTTCCATTGTAGTACCCTTACTCAACAATATCCCATGTCTCTTTTCAACAAGATCCACCACCTCCAACAAATCCAAAACCCTCTTCCTTCCACACAAACCAAATGACAACAACAAACCCATGATCAAATTCAAATGCTCTTCCTATAATATTCCCACCTCAAGCATAAACAANCCCGAATTGGACCATGATGAGCCCAACTTGTGTGAAGTGTGGAAGGAAATTCAAGGCTTCAACAACTGGGAAGGTCTATTAGATCCAATGAACCCACACCTCCGAAGAGAAATAATCCGCTACGGCGAACTTGCACAGGCATGCTATGACTCCTTTGACTTTGACCCACACTCTAAGTACTGTGGAACATGCAAGTACCACCCNGCGCATTTGTTCCAGAAGCTTAATATGGAAGATTCGGGATACACCATCACGCGCTACCTCTATGCAACTTCCAACATCAACCTCCCTAANTTCTTCCAGAAATCGAAGATCAGGAGCGTGTGGAGCCCACACGCGAATTGGATGGGTTACGTTGCNGTTGCCACCAACGAACAAGAGATCAAACGCTTAGGACGCCGTGACATAGTGATTGCATGGAGGGGTACGGTGACATACATAGAATGGATATACGACCTAAAAGACATTCTTCGCCCAGCAAACTTCACAAACGACCCAACCATNAAAGTGGAATCCGGGTTCTACGACNTATACACCAAGAAAGAAGACTCATGCAGCTATTGTTCTTTCTCCGCACGCGAACAGATTCTCTCNGAGGTGAAGCGTCTTCTCCAGTACTACGAAGAGGAAGAGCTCAGCATCACAATCACGGGGCACAGTCTCGGTGCTGCTCTCGCAATACTCAGTGCCTACGACATAGCCGAGTTGAAACTAAACGCCGTTACTCATGAAGACGGTACTGGTGGTGTGGTTAATAAGATTCCCGTTACGGTTTATTCCTTTGCGGGTCCCAGGGTTGGGAACTTGAAGTTTAAGGAAAGGTGTGAGGAGCTTGGGGTTAAGGTGTTGCGGGTGATAAACGTGCACGATATGGTCCCTACCGTGCCTGGGATAATCACCAATGAGAAGTTTCAGTTCCAAAGCCCATTTTTGAAGGGGAATGGTGACCTTGGNTGTGCACATAACTTGGAGGTTCACTTGCACTTGATGGATGGGTATCATGGGAAGGAGAAGGGGTTTAGGTTAGTGTCCAAGAGGGATATAGCTCTTGTGAACAAGAGTTGTGACTTTCTTAGGAGTGAGTATGGGGTGCCACCTCATTGGAGGCAGGATGAGAATAAGGGAATGGTGAGAAGTAGTGACGGAAGGTGGGTTTTGCCTGAACGGCCNAAACTTGAGGCCCATCCACCGGATACCGCGCACCATCTTCAGCTAGTGCTCAATAACCACCTTCCTCGTCACCAACCAGGAACCACGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00216	206702	210877	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000216s00014162.1	PF01764.20	Lipase_3	196	357	2.60E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.866
SRR1783600	control	2.808
SRR1783602	moderate drought stress	4.480
SRR1811619	moderate drought stress	4.326

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.485
DRR006520	Root Summer glycyrrhizin high producing strain	8.904
DRR006521	Root Winter glycyrrhizin high producing strain	1.827
DRR006522	Root Winter glycyrrhizin high producing strain	1.970
DRR006523	Root Summer glycyrrhizin low producing strain	3.210
DRR006524	Root Summer glycyrrhizin low producing strain	3.332
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.615
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.177

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.014
SRR2868004	Drought Stress (root)	0.159
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.438
SRR9715740	Leaf	2.486
SRR9715741	Leaf	2.973
SRR9715739	Root	0.000
SRR9715742	Root	2.390
SRR9715743	Root	1.955

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.331
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.096
SRR8749030	Uninduced	0.087
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.002
SRR8400027	Control - Root	0.242