Gene detail information of Glyur000216s00014158.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04590.1 | 0 | sulfite reductase |
| NR | XP_003537728.1 | 0 | PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Glycine max] |
| COG | YP_001518182.1 | 0 | sulfite reductase subunit beta [Acaryochloris marina MBIC11017] |
| Swissprot | tr|Q75NZ0|SIR_PEA | 0 | Sulfite reductase [ferredoxin], chloroplastic (Precursor) |
| trEMBL | tr|I1LIJ6|I1LIJ6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G09890.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00216 | 161528 | 168103 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00392 | sir | EC:1.8.7.1 | Sulfur metabolism | map00920 |
| Sulfur metabolism | map00920 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000216s00014158.2 | PF03460.12 | NIR_SIR_ferr | 18 | 73 | 4.40E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 71.419 |
| SRR1783600 | control | 71.692 |
| SRR1783602 | moderate drought stress | 90.147 |
| SRR1811619 | moderate drought stress | 89.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 83.575 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 82.187 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.539 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.995 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 75.699 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 75.865 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.281 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 77.855 |
| SRR2868004 | Drought Stress (root) | 77.158 |
| SRR2967015 | Control (root) | 65.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 47.733 |
| SRR9715740 | Leaf | 51.500 |
| SRR9715741 | Leaf | 53.416 |
| SRR9715739 | Root | 31.462 |
| SRR9715742 | Root | 115.413 |
| SRR9715743 | Root | 100.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 82.584 |
| SRR8749028 | MeJA induced 9h | 115.293 |
| SRR8749029 | MeJA induced 9h | 78.890 |
| SRR8749030 | Uninduced | 214.041 |
| SRR8749031 | Uninduced | 153.506 |
| SRR8749032 | Uninduced | 70.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 76.324 |
| SRR8400027 | Control - Root | 66.031 |