Gene detail information of Glyur000216s00014151 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17210.1 | 1.00E-39 | Protein of unknown function (DUF1218) |
| NR | KEH30636.1 | 3.48E-103 | transmembrane protein, putative [Medicago truncatula] |
| trEMBL | tr|A0A072UMM0|A0A072UMM0_MEDTR | 1.00E-103 | Transmembrane protein, putative {ECO:0000313|EMBL:KEH30636.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00216 | 134738 | 137773 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000216s00014151.1 | PF06749.7 | DUF1218 | 58 | 97 | 1.20E-06 |
| Glyur000216s00014151.1 | PF06749.7 | DUF1218 | 99 | 123 | 6.80E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.389 |
| SRR1783600 | control | 19.465 |
| SRR1783602 | moderate drought stress | 21.497 |
| SRR1811619 | moderate drought stress | 21.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.888 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.087 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.362 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.333 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.474 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.346 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.701 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.931 |
| SRR2868004 | Drought Stress (root) | 31.836 |
| SRR2967015 | Control (root) | 40.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.100 |
| SRR9715740 | Leaf | 27.225 |
| SRR9715741 | Leaf | 25.500 |
| SRR9715739 | Root | 17.684 |
| SRR9715742 | Root | 21.157 |
| SRR9715743 | Root | 23.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.661 |
| SRR8749028 | MeJA induced 9h | 11.376 |
| SRR8749029 | MeJA induced 9h | 12.585 |
| SRR8749030 | Uninduced | 2.767 |
| SRR8749031 | Uninduced | 0.786 |
| SRR8749032 | Uninduced | 0.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.317 |
| SRR8400027 | Control - Root | 43.671 |