Gene detail information of Glyur000216s00014148 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76860.1 | 4.00E-45 | Small nuclear ribonucleoprotein family protein |
| NR | KDP40389.1 | 1.53E-61 | hypothetical protein JCGZ_04208 [Jatropha curcas] |
| COG | YP_003483760.1 | 2.00E-10 | Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469] |
| Swissprot | tr|Q9C6K5|LSM3B_ARATH | 1.00E-57 | Sm-like protein LSM3B {ECO:0000305} |
| trEMBL | tr|A0A067L8E8|A0A067L8E8_JATCU | 6.00E-62 | Uncharacterized protein {ECO:0000313|EMBL:KDP40389.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00216 | 120867 | 123550 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000216s00014148.1 | PF01423.17 | LSM | 17 | 92 | 3.50E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.439 |
| SRR1783600 | control | 14.803 |
| SRR1783602 | moderate drought stress | 10.682 |
| SRR1811619 | moderate drought stress | 11.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.296 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.666 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 29.855 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.605 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.294 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.778 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 34.497 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 35.383 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 166.040 |
| SRR2868004 | Drought Stress (root) | 120.633 |
| SRR2967015 | Control (root) | 107.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 73.413 |
| SRR9715740 | Leaf | 83.216 |
| SRR9715741 | Leaf | 70.257 |
| SRR9715739 | Root | 21.353 |
| SRR9715742 | Root | 20.503 |
| SRR9715743 | Root | 24.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 89.253 |
| SRR8749028 | MeJA induced 9h | 49.607 |
| SRR8749029 | MeJA induced 9h | 54.337 |
| SRR8749030 | Uninduced | 31.966 |
| SRR8749031 | Uninduced | 23.800 |
| SRR8749032 | Uninduced | 18.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 79.743 |
| SRR8400027 | Control - Root | 89.789 |