Gene detail

Gene detail information of Glyur000216s00014141

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G43950.1	Plant protein of unknown function (DUF946)
NR	XP_004505614.1	PREDICTED: uncharacterized protein LOC101493338 [Cicer arietinum]
trEMBL	tr\|G7JRR5\|G7JRR5_MEDTR	Pre-mRNA processing protein PRP39, putative {ECO:0000313\|EMBL:AES89598.2}

Sequence

Transcript Sequence

>Glyur000216s00014141.1
ATGCTTGGCTCCAAGTGCTTTCGTAGGAACACAATTGCATTCCCTCAATCGTCTTCCTNTCACTCTCATCAAATCTTCTCTCTTCCGGCTCCGATCCCTCAATGGCCTCAAGGACAAGGTTTTGCTTCAGGACTTGTAAATCTTGGTGAAATAGAAGTTTTCAAGGTCACTAAGTTTGAGTTCATTTGGAGCAGTGCTACTATACTAGACCCCAAGAAAGCTGTTACATTCTACAAGCCTGTGGGAATACCTGACAATTTCCATATNCTTGGTCACTATTGTCAACCCAGCGACAAGCCTTTACGGGGTTTTGTACTTGTTGCTAGAGAAATTGGAACTTGCTTGCCCCAAAGTGGTGAGGAAAAGTTACCTCCTCTGAGGAATCCCCTTGACTTTAAGTTAGTTTGGAGTCCATATGTAGCAAGTCAGGAAATTTCAAGTGGAGGTGGTTACTTTTGGCTACCCCAACCTCCTGAAGGTTACAAGGCCCTTGGNTACTTGGTTACTAACAAACCTGACAAGCCTGAGTTGGATGAAATGTGCTGTGTTCGCGCNGACCTCACCGACAAATGCGAGCCTTACCGCCGAATACTTTCTGTTGGTTCTAAAGTTCCTGAGTTTTCATTTCATGTATGGAGCATGAGACCTTGTGACCGTGGCTTGCACGGGAAAGGTGTTTCTGTTGGGACATTTTCCTGCACCAGTGANTGGAACAAGGGAGAAGAACTTCCTGTTGCATGCTTGAAGAACCTAAACCCTTTGCTACCAGCAATGCCTAACTTGCAACAAATTCATGCACTCATTAGCCATTATGGCCCTACTGTTTTCTTTCACCCTCAGGAAATTTACTTGCCATCTTCTGTTGATTGGTTTTTCAACAANGGAGCCCTCTTGTACAGAAAGGGTGTGTCTACAGGAGAGGGAATCGATGCAACCGGATCGAATTTACCGAGTGGAGGAACAAATGATGGGCAGTTTTGGATAGACTTGCCGAGNGACAATCGAAAGGACTTTGTCCAACGCGGGGACTTAAAAAGCGCAAAACTTTATGTTCATGTGAAGCCAGCTCTTGGTGGGACTTTTACAGATATCGCGATGTGGGTATTTTGCCCCTTCAATGGGCCAGCCACTCTGAAAGTTGGGATTAAGAACATGCCATTGAGCAAGATTGGAGAGCATGTTGGTGACTGGGAGCATTTTACGCTTCGAATATGCAACTTCNTCGGAGAGCTCTATAGTATATACTTCTCACAGCACAGTGGTGGAGAGTGGGTTGATGCCTATGACTTGGAGTATATTGATGGCAATAAAGCTATTGTTTACTCATCAAAATGTGGACATGCAAGTTACCCTCATCCTGGGACCTATATCCAAGGTTCTTCAAAACTGGGACTTGGCATTAGGAATGATGCTGCTCGTAGCAATTTTTACTTGGATTCTAGTGTTCATTATGAGGTTGTTGCAGCTGAGTATCTTGGGGATGTTGTCACTGAGCCTAATTGGTTGCAGTTTATGAGAGAGTGGGGCCCCAAAATTGTTTATGATTCAAAAACTGAGCTGGATAGGATTATCAATGCTCTCCCTCGCATGCTTCAATACTCAATGAGGAACTTGTTTAACAAGTTTCCAGTGGAGCTGTATGGTGAGGAAGGTCCTACTGGGCCAAAAGAGAAAAATAATTGGATACAGGATGAGAGATGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00216	90618	93486	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000216s00014141.1	PF06101.6	DUF946	23	565	2.50E-255

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.151
SRR1783600	control	9.876
SRR1783602	moderate drought stress	5.467
SRR1811619	moderate drought stress	5.492

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.804
DRR006520	Root Summer glycyrrhizin high producing strain	6.109
DRR006521	Root Winter glycyrrhizin high producing strain	10.302
DRR006522	Root Winter glycyrrhizin high producing strain	9.873
DRR006523	Root Summer glycyrrhizin low producing strain	3.469
DRR006524	Root Summer glycyrrhizin low producing strain	3.184
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.296
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.750

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.681
SRR2868004	Drought Stress (root)	5.284
SRR2967015	Control (root)	5.231

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.959
SRR9715740	Leaf	0.561
SRR9715741	Leaf	1.636
SRR9715739	Root	7.053
SRR9715742	Root	10.047
SRR9715743	Root	9.841

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.847
SRR8749028	MeJA induced 9h	1.877
SRR8749029	MeJA induced 9h	1.654
SRR8749030	Uninduced	1.117
SRR8749031	Uninduced	0.637
SRR8749032	Uninduced	1.081

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.851
SRR8400027	Control - Root	11.570