Gene detail

Gene detail information of Glyur000216s00014140

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17060.1	2.00E-102	ADP-ribosylation factor B1B
NR	NP_001237701.1	5.61E-138	uncharacterized protein LOC100499903 [Glycine max]
COG	YP_001737337.1	3.00E-35	small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8]
Swissprot	tr\|Q06396\|ARF1_ORYSJ	8.00E-80	ADP-ribosylation factor 1
trEMBL	tr\|C6SXY9\|C6SXY9_SOYBN	2.00E-138	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G09790.1}

Sequence

Transcript Sequence

>Glyur000216s00014140.1
GTTAAGATGAGAAAGTAGACCGTTCTTAATTGTAACTATACACACATTTGTTTTTGCATTTGAAGGTATATTGAGCATGAAAATATCTTTTGCTAATTTATAAAAGTATTTTATCCTCCAAGAAAGAACGATATATTCCTGGGAATTATTATTTTTTTGTTACCATAATATTGGCAGCGAGTCGCACCAAACGAAGGTGTTGTTAATTGATTTTTCCAAATCAAACGCAAGTGGGAAGGAAGGAAGAAGGAAAAGAAACTAGAGGCAACGCAATTGAATTCCATTCCCTTCCCTTTGCAATTCATAATCTGTTTTTGTGAATAGAAATAAATCGCTTAATCGAGCACTAGTTTGATTTGATTTGATCGCATGGGTCAAGCTTTTCGGAAGCTCTTCGATACCTTCTTCGGCAATACCGAGATGCGGGTTGTCATGCTTGGTCTTGATGCTGCTGGAAAAACAACTATACTGTACAAGCTCCACATTGGAGAAGTTTTATCTACTGTTCCTACTATTGGTTTCAATGTGGAGAAGGTTCAGTATAAGAATGTTATTTTCACGGTTTGGGATGTTGGAGGACAAGAGAAATTGAGGGCACTCTGGAGGCACTATTTTAACAACACAGATGGTTTGATATATGTTGTTGATAGTCTGGATCGCGAGAGAATTGGGAAAGCAAAGCAGGAATTTCAGACAATCATAAATGATCCATTTATGCTCAACAGTGTCATCTTGGTGTTTGCCAACAAACAGGACCTGAAAGGAGCGATGTCTCCAAGGGAAGTATGTGAAGGATTAGGTCTCTTTGAACTCAAGAATAGAAAATGGCACATGCAAGGCACTTGTGCGCTTAGGGGTGATGGCCTTTATGAGGGCTTGGACTGGTTGTCCTCAACTCTGAAGGAGAGGAAAGCTGCTGGATACTCTTCATTAGGACTAGGAACTTCATCCTTCTAATTTTCCAGGTATTTTGGCCTTTAGGATTTGGCGATGAATGTGTAGACTGTGGCCAGTTCTAAAATGCCATGATTGGTAATCAAATTCTTTGGGTTTCATCTGAAGCTGATGAAGAATATTTGTTACTACGCCTTTGAGGGTACTTAAGATATGTGACTTGCTCCAATTGTAGAAGTTTGTGCATGACGAATGATTAACTAAATTCTGTTGCTATATTGATACCTCCCTCGTTAAGTGCACGANTGCTGACTGGATTGAAGGTCATGGATGGTGGAATGGATCATTTGTTCATTCTCCACTCTGTGTGGTATTTCTGTGTGGCTGTGCCTGGTGCCTTGATTCATTAAAATAATGATTCTTCTGACTAATATAATGGGATCTTGTCACGATTTTCTTCAAGGCAACTTGTTACTATGATTCAATTCAATTGGGTGGTTGCAATTTTTACCCTTCTTTTTCATTTGTTTATAATAATAATATGCCGGCTAACTTCTGTTGGAAATGTTTTGTATATGAGGAAATTGTTACTACAAATGCTTTTAACTAAAATGTTTGCTCGAGTATCAAATGGATTGACGCATGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00216	83943	89101	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0007264 small GTPase mediated signal transduction

cellular_component
GO:0005622 intracellular

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000216s00014140.1	PF00025.16	Arf	6	176	2.50E-69
Glyur000216s00014140.2	PF00025.16	Arf	6	176	2.50E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.013
SRR1783600	control	7.938
SRR1783602	moderate drought stress	5.909
SRR1811619	moderate drought stress	5.876

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.627
DRR006520	Root Summer glycyrrhizin high producing strain	11.777
DRR006521	Root Winter glycyrrhizin high producing strain	24.288
DRR006522	Root Winter glycyrrhizin high producing strain	23.324
DRR006523	Root Summer glycyrrhizin low producing strain	12.454
DRR006524	Root Summer glycyrrhizin low producing strain	11.897
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.413
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.407

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.443
SRR2868004	Drought Stress (root)	33.140
SRR2967015	Control (root)	31.400

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.737
SRR9715740	Leaf	19.253
SRR9715741	Leaf	26.809
SRR9715739	Root	16.053
SRR9715742	Root	15.258
SRR9715743	Root	15.301

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.213
SRR8749028	MeJA induced 9h	51.991
SRR8749029	MeJA induced 9h	42.296
SRR8749030	Uninduced	37.564
SRR8749031	Uninduced	58.362
SRR8749032	Uninduced	44.271

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.884
SRR8400027	Control - Root	25.354