Gene detail

Gene detail information of Glyur000216s00014135.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G13780.1	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative
NR	KHN46449.1	Putative methionine--tRNA ligase [Glycine soja]
COG	YP_003804586.1	methionyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
Swissprot	tr\|Q9ZTS1\|SYM_ORYSJ	Probable methionine--tRNA ligase
trEMBL	tr\|K7LSI4\|K7LSI4_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G02076.3}

Sequence

Transcript Sequence

>Glyur000216s00014135.1
CTCTTTCTTATCTGCAGACATTCTCATTGCNTTTCAGTTTCTCACTCACTCTCGCGGTGGTTTTGGCGGCGGAGCTGTGTCATTTCTCCGGCGAGATTCCAACGCGGTGAAAGTTTTAAATGGCGGAAGATCGAAACGTGCCGAAGCTTCCCGTGGAAGGGAAGCGCAACATCCTCATCACCAGTGCTTTGCCTTACGTCAACAACGTCCCTCATCTTGGCAACATCATTGGATCCGTGTTGAGTGCCGATGTGTTTGCTCGGTACTGTCGGCTTAGGGGTTATAATGCTATTTACATCTGCGGCACTGATGAGTATGGCACAGCAACAGAGACTAAAGCCATGGAAGAGAATTGTTCTCCCAAAGAGATTTGTGACAAATACCATGCTACTCATAAGGAGGTTTACAATTGGTTCAATATAAGTTTTGATGAATTTGGGCGGACCTCTTCCCCTCAGCAAACTGAAGTTTGCCAAGCAATTTTCAGAAAGATTTTTGATAACAAATGGCTCTCTGAGAACACAATGCAGCAGCTTTACTGTGATAAATGCGAAAGGTTCTTAGCTGATCGGTTCGTGGAGGGTACCTGCCCAACTCCGGGGTGTGAGTATGATTCTGCTCGAGGAGACCAGTGTGAGAAGTGTGGAAAGCTTCTAAATCCAACTGAATTGAAGAATCCCAGGTGCAAGGTTTGTCAAAAAGCTCCCCGTATTCGTGATACAGACCACTTGTTTCTTGAGCTCCCTCTGTTGAAAGATAAATTGGAAAAATACATCAAAGAGATGTCTGTGGCCGGATCATGGAGTCAGAATGCTATTCAAACAACAAATGCATGGCTCAGAGAAGGACTAAAGCCACGCTGTATTACCAGAGATCTGAAGTGGGGGGTTCCTGTTCCACATGAAAAATACAGTGACAAGGTTTTCTATGTTTGGTTTGATGCACCTATTGGATATGTCTCAATCACTGCATGCTACACACGTGATTGGGAGAAATGGTGGAAAAACCCAGAGAATGTGGAGTTGTATCAGTTTATGGGCAAGGACAACGTGCCTTTCCACACTGTGATGTTTCCATCTACTCTACTTGGAACTGGTGAAAATTGGACTTTAATGAAGACTATCAGTGTTACTGAATACTTGAATTATGAAGCAGGGAAGTTTTCTAAGAGCAAAGGCATTGGGGTATTTGGTAATGATGCAAAAGATACTGATATTCCAGTTGAAGTATGGAGATATTACCTGCTAACAAATAGGCCTGAGGTATCAGATACATTATTTACATGGCCCGACTTGCAAGCGAAATTAAATAGTGAGTTGCTGAATAATTTGGGAAACTTCATCAATCGAGTTTTGAGTTTTATTGCCAAACCTGCAGGTCAAGGATATGACTCCATTATTCCCACTGTTCCTGATGATATAAGTGGTGACTCCCATGATCTGACCAAAAAATTGGCTGATAAAGTTACTGCATATTTGGAGCAATACATAGAAGCAATGGAGAAGGAAACTGAATTTTGGCGCCTTTACAAGGCAAACCGATCTCTCTGTGCCCTTGTTATGAAAACTGCAACTGGGATTGTTTTTCTTCTTGCTTGTTTATTGGAACCTTTTATGCCTTCTTTCACTCTTGAGGTATTTAAGCAGCTAAATTTGTCTGCGGAGGTACATCTTTCACTTTGTGATATCGATAGGGTAAGAAGACCGTGGGATATCATAAGTGCTGGTCATAAAATTGGAACACCCAAGCCTTTGTTCAGGGAGCTGAAAGATGAAGAAGTGGAGTTCTACAGGAAGAAATTTGCAGGAAGTCAAGCTGATAGGATCATTCGTGCAGAGGCTGAAGCCGAAAATGTTGCTGAGCAACTGAAGAAAACAAAAGTTTCAGATGGCAATGGGAAGAAAAAATCATCGGCAAAATCATTAAATGAAGCCAAAAACAAGGCTGCTGCTGAACCAGCTATTACCATCACAAGGCTCGATATTCGGGTTGGTCTCATAAAAAAGGCTGAAAAACATCCAGATGCAGATTCACTATATGTTGAAGAGATTGATGTTGGTGAAGAAAAGACCAGAACGGTTGTCAGTGGACTTGTCAAGTATATACCACTTGATGAAATGCAGAACCGAAAGGTCTGTGTTCTCTGCAACCTAAAGCCAGCAACCATGAGGGGCATTAAATCCCAAGCAATGGTTCTTGCTGCTTCCAATGATGATCACACCAAGGTNGAGTTGGTTGAACCGCCCAGTTCTGCTACTGTTGGAGAAAGAATTACATTCCCAGGGTTTGAAGGTAATCCGGATGAACTCTTAAACCCAAAGAAGAAAGTTTGGGAGACATTGCAAGTTGATCTGCACAGTAATGAGGAACTAGTGGCATGCTACAAAAATGTTCCACTCACCACATCGGCTGGCATTTGCAAGGTTGCATCCGTACGCTCTGGATCAATAAGGTAGACAAACATCAAGGATTGGAGTTTTGAGAGGGGGAGAGAAGAAAATTAAAAAGGAAAAAAAAACATATTTTAGATATAAAATTATAATTATTATAATTATAATTTATATTTGAGGGCGAGCCTTAGCATAATGGTAAGATTGATGTGTTGTGACCTGGGGGTCACGAGTTCAGATTTGGAAACAGTCTCTCCGCTTGTGGGGATAAGGTTGCGTACATTTACCCTTCACAGACTGCACATGGTGGGAGCTTCATGCACTCCTTTTTATTATAAATTATAATCTGACTCGCAGATTTGTCAGTTTTTCATGTTGCCACAAGTGTAGAATTTACTTATTTGTAATTTTGACTTGATTTTTGCTCCCTCAGTCTAAACGGTTATGAGCTGGGGCCAACTTCTTGTCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00216	48102	56255	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01874	MARS, metG	EC:6.1.1.10	Selenocompound metabolism	map00450
			Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006431 methionyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000049 tRNA binding

GO:0000166 nucleotide binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004825 methionine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000216s00014135.1	PF09334.6	tRNA-synt_1g	18	412	9.30E-150
Glyur000216s00014135.1	PF01588.15	tRNA_bind	622	717	4.40E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.495
SRR1783600	control	26.406
SRR1783602	moderate drought stress	26.558
SRR1811619	moderate drought stress	26.556

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.270
DRR006520	Root Summer glycyrrhizin high producing strain	34.871
DRR006521	Root Winter glycyrrhizin high producing strain	50.384
DRR006522	Root Winter glycyrrhizin high producing strain	49.384
DRR006523	Root Summer glycyrrhizin low producing strain	34.530
DRR006524	Root Summer glycyrrhizin low producing strain	34.558
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.851
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.908

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.170
SRR2868004	Drought Stress (root)	57.331
SRR2967015	Control (root)	59.771

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.247
SRR9715740	Leaf	46.800
SRR9715741	Leaf	41.943
SRR9715739	Root	3.774
SRR9715742	Root	37.615
SRR9715743	Root	37.085

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	109.463
SRR8749028	MeJA induced 9h	106.102
SRR8749029	MeJA induced 9h	80.964
SRR8749030	Uninduced	38.966
SRR8749031	Uninduced	19.826
SRR8749032	Uninduced	25.769

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	59.367
SRR8400027	Control - Root	54.469