Gene detail

Gene detail information of Glyur000216s00014130

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17010.3	4.00E-180	Major facilitator superfamily protein
NR	XP_004505609.1	0	PREDICTED: D-xylose-proton symporter-like 2-like [Cicer arietinum]
COG	YP_004290515.1	5.00E-86	sugar transporter [Methanobacterium sp. AL-21]
Swissprot	tr\|Q6AWX0\|XYLL2_ARATH	0	D-xylose-proton symporter-like 2
trEMBL	tr\|G7JSQ2\|G7JSQ2_MEDTR	0	Sugar porter (SP) family MFS transporter {ECO:0000313\|EMBL:AES89609.1}

Sequence

Transcript Sequence

>Glyur000216s00014130.1
GCAAATATGCAGATATGCCTATTTTTTCCAGAATTTTTGGTTTGAACAAGACACAAAGCTAAGTGAATGCATGATGTTATTGTGAAATACAATTGAGACGTGTCTAAACGCTGATCCAAGTGATTCCTTCAACTACCACTCACTCCCCATTCCTTCCTTCCTGTCAAACTCAGAATCCATTTCTCTCAGTTCCTACTGCCATTTTCAAACTTCAAATCAATGGCATCCGATCCTGAGCAACTCACTCTTTCCTCTTTCGCAAAGGAAGGAAAGTCATCCAGTGAGATTGGGAGTTCAAGGGAGCCTCTGCTTAATGGGGTTCATGCCTCTGAAAACTATTCCATCTGTGCTGCAATTCTCCCATTTCTCTTCCCAGCTTTTGGTGGTCTACTATTTGGCTATGATATCGGTGCTACATCTTGTGCAACAATTACCATTCAGTCACCAACAGTAAGTGGAGTAACTTGGTACAACTTAGACTCTGTTGAAATCGGACTTGTTACTAGTGGATCATTATATGGTGCTTTAATCGGCTCTGTGTTGGCCTTTAATATTGCTGACTTCTTAGGGAGAAGAAGAGAGCTTATCGTAGCTGCATTGCTGTATCTTGTTGGAGCTCTTGTAACAGCATTAGCTCCTAATTTTGCTGTATTGGTGGTTGGCAGATTTGCAATGCATGCTGCTCCGATGTACATTGCAGAGACAGCTCCATCGTCAATACGTGGACTATTAATCTCTCTGAAAGAGTTCTTTATAGCAGGATATGGAATAGGTAGCTTGTTGGTAGACATTGTTGCTGGGTGGCGGTATATGTATGGAGTTAGTAGTCCTGTGGCAATAATAATGGGAATTGGAATGTGGTGGCTCCCAGCTTCTCCTAGATGGCTACTTTTACGTGCTATACAGGGAAAAGGGGATGTTCGAAATTTGAAAGACACGGCAATTCATTGTTTGTGTCGGCTTCGAGGTCAGTCCATTCGTGATTCTGCTCCTCAGCAAGTAGATGAGATTCTGGCAGAGCTTTCTTATGTTGGTGAAGAGAAAGAGGTTACCTTTGTAGAAATGTTCAGAGGAAAATGCTCGAAGGCCCTTTTGATTAGTTCAGGATTAGTCTTGTTTCAACAGATCACAGGACAACCAAGTGTGCTCTACTACGCTGCATCGATCCTTCAGAGTGCAGGATTCTCTTTAGCATCTGATGCTACCCGGGTCTCTATTCTCCTTGGTTTATTTAAGTTGATTATGACTGGAGTTGCTGTTGTCATTGTCGATAAAGTTGGAAGGAGACCTTTACTACTTGGGGGGGTTTCGGGAATGGTGATCTCTTTATTCCTTCTGGGTTCATATTACATTTTCTTGGATAACGCAGCGGTTGTTGCTGTAGTTGGTCTGTTGCTGTATGTTGGCTGTTATCAGATTTCCTTTGGTCCAATTGGTTGGCTTATGATAGCAGAGATCTTTCCCTTGCGCCTGCGAGGACGAGGACTTAGTATCGCAGTACTGGTCAATTTCGGGGCAAATGCCCTGGTGACATTTGCCTTTTCCCCACTGAAGGCATTACTGGGAGCAGGAATTTTGTTTTACATATTTTGTGCAATAGCTGTGGCATCTCTTGTGTTCATATACTTCATTATACCAGAAACCAAGGGGCTTACACTAGAGGAAATTGAGGCAAAATGTCTGTAATCAAGTCACCTTGTTGTTACCTCTATAAATTTCTGAATATGGTACTCTCATGCAACTTGTATTGCATCCCTGTGTATCTGTAATGACACATTATATGTATTATAATTATAATTAATGGTACATTCTAGATACGAATTAGCTATGTTTAATCCCCAGCTGATTAATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00216	19807	26117	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000216s00014130.1	PF00083.19	Sugar_tr	50	485	2.60E-83

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.521
SRR1783600	control	15.704
SRR1783602	moderate drought stress	9.420
SRR1811619	moderate drought stress	9.198

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.487
DRR006520	Root Summer glycyrrhizin high producing strain	23.446
DRR006521	Root Winter glycyrrhizin high producing strain	12.585
DRR006522	Root Winter glycyrrhizin high producing strain	12.476
DRR006523	Root Summer glycyrrhizin low producing strain	17.284
DRR006524	Root Summer glycyrrhizin low producing strain	17.232
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.278
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.175

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.938
SRR2868004	Drought Stress (root)	61.188
SRR2967015	Control (root)	87.788

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.453
SRR9715740	Leaf	20.128
SRR9715741	Leaf	16.105
SRR9715739	Root	46.301
SRR9715742	Root	34.113
SRR9715743	Root	38.011

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.146
SRR8749028	MeJA induced 9h	27.409
SRR8749029	MeJA induced 9h	11.563
SRR8749030	Uninduced	15.718
SRR8749031	Uninduced	6.276
SRR8749032	Uninduced	7.148

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.494
SRR8400027	Control - Root	40.099