Gene detail

Gene detail information of Glyur000216s00014128.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66770.1	4.00E-144	GRAS family transcription factor
NR	XP_004505608.1	0	PREDICTED: scarecrow-like protein 4-like [Cicer arietinum]
Swissprot	tr\|Q9FL03\|SCL4_ARATH	0	Scarecrow-like protein 4
trEMBL	tr\|G7JSQ4\|G7JSQ4_MEDTR	0	GRAS family transcription factor {ECO:0000313\|EMBL:AES89611.2}

Sequence

Transcript Sequence

>Glyur000216s00014128.1
CGTTCTAGTTCTAGGTTCTCTTCTCTCTCCCGGTTGCTGCCTCTCTGCTCCATCTCACACACTCACACTCCTTTCAACGGCTCAATCAATCAAAAAACACACCCCACTCTCTCCCTCACCTCACCCCTTACCCACTCTCCTTTTTCTAATTCCAAGTTCACACTTGCCTTGAAGCTGTTGAGCACATCCAAAATCTATTCTTCCACAGTCCCCATCCGTCACTGCATCATCACCACCACCATATATTATAATTATAATTATAATTATAATATTAACAACATAGATTGTTAATAGATATAGGCCACTCCACTCCACTCTGTGTTACTCACCAGTTACCACTACCTCCCTCCAAGTTAAGTAGGTGGGAGAGAAATATGGCTTACATGTGTACAGACAGTGGGAACCTCATGGCTATTGCTCAACAAGTCATCAAGCAGAAGCAGCAACAAGAACAGCAAGAACAACAGCAACACCAACACCTCTTGGGTAGTACTATCACCACCCCTCTCTCTCTCCACCACCCATGGAACACCACTCCACCACCACCCTTGGGTGGGTTCCCCCTCCCAGCGCCCGCAGATTTCCCTGACCCGTTTCAAGTCGGNTCGGGTCCAGCGGATCCCGGGTTCCAGTTCCCTCCGTTAGACCCCCACTCCGCCGCCTTCCGATTCTCCGACTTCGACTCCGACGACTGGATGGACACCCTAATGGCCAACGCCGACTCAACCGAAACCCCGGATTTCTCCAACCCGTTTACCTCCACGTGTCCTCCTTCGGATCTCAACCGGGTCATATTCTCATCGGAGCCCCAAACCACGACAACCACCACCACCGTACCCCTCCAACTCCCCACCCCGCCACCACCGTCAAAACCCACCCCACACCGAAACGACACCAACACCACCACCGAAACGACACCGTCTTCACACCCACTCCTTAAAGCCCTAACAGACTGCGCAATTCTCGCCGAAACCGAACCGGATCGAGCCATAGAGTCACTTACCCATCTCAGCAAAACGGCGTCGCAACACGGAAACCCAACACAGCGAGTCGCCTTCTACTTCACCCAAGCCCTAACCCACAAAATAACCGCCGAAAAAGAGAAAACAGAGAAACCGAAAGAGAAACAGAAGAACTTCTCCATGGTAACGACTTGGGAGGAATTAACACTCTCTTCTTACAAAGCACTAAACGACGCTTGCCCTTATTCAAAGTTCGCTCATTTAACTGCGAACCAAGCAATACTCGAAGCAACGGAAGGTTCAACAGAGATTCACATAGTTGATTTTGGAATCGTTCAAGGGATTCAGTGGGCTGCACTGTTACAAGCTTTTGCTACTCGTTCTTCAGGGAAGCCTCAGAGTATAAGGATTTCAGGGATACCCGCAATGGCTCTTGGAACTTCACCTGGTTCTTCTCTTACTGCAACCGGTAACCGTCTCTCCGAGTTCGCGAAGCTTCTCGGGTTGAATTTCAAGTTCACACCGATTCTCACTCCGATTCATCAACTCAACGAGTCTAGTTTTTGCGTCATGCCAAACGAGGCCTTAGCTGTTAACTTCATGCTTCAGCTTTATAACCTTTTGGATGAGACTCCTGATATGGTTGAAACCGCACTTCGTTTGGCTAAGTCATTGAACCCGAAGATTGTGACGCTTGGTGAGTATGAAGCTGGGTTGACCCGTGTTAATGGGTTTGTCAGCAGGTTTAACACTGCATTGAGGTATTTCTCGGCTTTGTTTGAGTCTTTGGAGCCAAAAATGGCACCGGACTCGCCTGAGAGGTTTCAGGTGGAGAGTCATTTGCTCGGACGGCGAATCGCCGGCGTGATTGGGCCGGAGTTGCCGGGGACTTTGAGGGAGAGGATGGAGGATAAAGAGCAGTGGAGGGTTCTGATGGAAAGTTGTGGTTTTGAATCGGTTAGTTTGAGCCATTATGCAATTAGTCAAGCTAAGATACTCTTGTGGAATTATAGCTATAGTACTCTATATTCTCTTGTTGAGTCCCAACCTGGGTTTTTGTCTCTGGCTTGGAAAGATGTTCCTCTCTTGACTGTTTCTTCATGGCGTTAATGGGGCTGTTGTTAATTGGCCTTCTAAATCAAAACTTGGGTAATGGGTTTTTCCACCTGGTCCTTTTTTAAACTCTGGTGTGGAACAACAACTAATTATTATTGTCTATATGCTGTTTGATGATGAATATGATGGTGGTGGTGCTAGGCAAGTTCAATTGATCGTTGCTTGGTGAAGAAATTCTATGCAGATTTGATGTGTTGTTTGCACGGCCAACACCAGAATTTTGGGAGTATTGTTATTACCATTTGGGCTGTAATTTTAGCTGTTTGGTCTCCTATAGTTCCACACCCCCTCTAAGCCCTTCTTTTGTTTTCAATTGGTTTTTCTTTTGTTTTCAATTATAGCGTGTTGGTGTTGCAATGGTGTATTAGGAGATGAAGACTTGTGACTAGACAAATAGTGATGATCAAGGGAATGAATGGACTTTGAAGACATGGGAAGGAAGGGAAAAAGCTTTCTTTCCCGTTGCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00216	11116	13763	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000216s00014128.1	PF03514.9	GRAS	188	565	2.60E-106

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.168
SRR1783600	control	35.278
SRR1783602	moderate drought stress	58.999
SRR1811619	moderate drought stress	58.688

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.662
DRR006520	Root Summer glycyrrhizin high producing strain	27.644
DRR006521	Root Winter glycyrrhizin high producing strain	5.626
DRR006522	Root Winter glycyrrhizin high producing strain	5.542
DRR006523	Root Summer glycyrrhizin low producing strain	77.161
DRR006524	Root Summer glycyrrhizin low producing strain	77.166
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.158
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.151

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.765
SRR2868004	Drought Stress (root)	34.279
SRR2967015	Control (root)	38.187

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.892
SRR9715740	Leaf	14.507
SRR9715741	Leaf	14.890
SRR9715739	Root	41.910
SRR9715742	Root	37.385
SRR9715743	Root	39.006

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.748
SRR8749028	MeJA induced 9h	8.886
SRR8749029	MeJA induced 9h	2.890
SRR8749030	Uninduced	4.941
SRR8749031	Uninduced	0.490
SRR8749032	Uninduced	0.389

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.458
SRR8400027	Control - Root	27.889