Gene detail information of Glyur000215s00017035.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G69170.1 | 5.00E-43 | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein |
| NR | XP_006578521.1 | 0 | PREDICTED: squamosa promoter-binding-like protein 18-like [Glycine max] |
| Swissprot | tr|Q94JW8|SPL6_ARATH | 1.00E-47 | Squamosa promoter-binding-like protein 6 |
| trEMBL | tr|K7KKE6|K7KKE6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G32002.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00215 | 228083 | 234013 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SBP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000215s00017035.1 | PF03110.9 | SBP | 179 | 264 | 5.60E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.857 |
| SRR1783600 | control | 3.912 |
| SRR1783602 | moderate drought stress | 4.250 |
| SRR1811619 | moderate drought stress | 4.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.831 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.686 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.348 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.338 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.724 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.899 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.521 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.710 |
| SRR2868004 | Drought Stress (root) | 1.814 |
| SRR2967015 | Control (root) | 1.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.840 |
| SRR9715740 | Leaf | 3.075 |
| SRR9715741 | Leaf | 1.331 |
| SRR9715739 | Root | 1.007 |
| SRR9715742 | Root | 2.290 |
| SRR9715743 | Root | 2.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.372 |
| SRR8749028 | MeJA induced 9h | 1.446 |
| SRR8749029 | MeJA induced 9h | 0.740 |
| SRR8749030 | Uninduced | 0.281 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.025 |
| SRR8400027 | Control - Root | 3.457 |